Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3518 and Shewana3_3519 are separated by 6 nucleotides Shewana3_3519 and Shewana3_3520 are separated by 71 nucleotides Shewana3_3520 and Shewana3_3521 are separated by 144 nucleotides Shewana3_3521 and Shewana3_3522 are separated by 170 nucleotides
Shewana3_3518: Shewana3_3518 - hypothetical protein (RefSeq), at 4,220,004 to 4,220,426
_3518
Shewana3_3519: Shewana3_3519 - glutathione S-transferase domain-containing protein (RefSeq), at 4,220,433 to 4,221,029
_3519
Shewana3_3520: Shewana3_3520 - oxidoreductase FAD/NAD(P)-binding subunit (RefSeq), at 4,221,101 to 4,221,850
_3520
Shewana3_3521: Shewana3_3521 - hypothetical protein (RefSeq), at 4,221,995 to 4,222,588
_3521
Shewana3_3522: Shewana3_3522 - phosphoglycerate mutase (RefSeq), at 4,222,759 to 4,223,352
_3522
Position (kb)
4221
4222 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4220.567 kb on - strand, within Shewana3_3519 at 4220.576 kb on - strand, within Shewana3_3519 at 4220.612 kb on - strand, within Shewana3_3519 at 4220.659 kb on + strand, within Shewana3_3519 at 4220.724 kb on + strand, within Shewana3_3519 at 4220.902 kb on - strand, within Shewana3_3519 at 4220.995 kb on + strand at 4221.051 kb on - strand at 4221.186 kb on + strand, within Shewana3_3520 at 4221.274 kb on + strand, within Shewana3_3520 at 4221.341 kb on - strand, within Shewana3_3520 at 4221.352 kb on + strand, within Shewana3_3520 at 4221.369 kb on + strand, within Shewana3_3520 at 4221.369 kb on + strand, within Shewana3_3520 at 4221.377 kb on - strand, within Shewana3_3520 at 4221.377 kb on - strand, within Shewana3_3520 at 4221.409 kb on - strand, within Shewana3_3520 at 4221.426 kb on - strand, within Shewana3_3520 at 4221.457 kb on + strand, within Shewana3_3520 at 4221.465 kb on - strand, within Shewana3_3520 at 4221.485 kb on - strand, within Shewana3_3520 at 4221.527 kb on + strand, within Shewana3_3520 at 4221.529 kb on - strand, within Shewana3_3520 at 4221.535 kb on - strand, within Shewana3_3520 at 4221.535 kb on - strand, within Shewana3_3520 at 4221.535 kb on - strand, within Shewana3_3520 at 4221.535 kb on - strand, within Shewana3_3520 at 4221.569 kb on - strand, within Shewana3_3520 at 4221.767 kb on - strand, within Shewana3_3520 at 4221.887 kb on + strand at 4221.892 kb on + strand at 4221.939 kb on - strand at 4221.978 kb on + strand at 4222.034 kb on + strand at 4222.132 kb on + strand, within Shewana3_3521 at 4222.140 kb on - strand, within Shewana3_3521 at 4222.271 kb on - strand, within Shewana3_3521 at 4222.580 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 4,220,567 - Shewana3_3519 0.22 +2.4 4,220,576 - Shewana3_3519 0.24 +0.7 4,220,612 - Shewana3_3519 0.30 -0.1 4,220,659 + Shewana3_3519 0.38 -0.9 4,220,724 + Shewana3_3519 0.49 -1.7 4,220,902 - Shewana3_3519 0.79 +1.0 4,220,995 + -1.4 4,221,051 - +0.4 4,221,186 + Shewana3_3520 0.11 +0.2 4,221,274 + Shewana3_3520 0.23 +1.0 4,221,341 - Shewana3_3520 0.32 -0.2 4,221,352 + Shewana3_3520 0.33 -1.8 4,221,369 + Shewana3_3520 0.36 -1.9 4,221,369 + Shewana3_3520 0.36 -0.8 4,221,377 - Shewana3_3520 0.37 +0.2 4,221,377 - Shewana3_3520 0.37 +0.4 4,221,409 - Shewana3_3520 0.41 -1.3 4,221,426 - Shewana3_3520 0.43 +1.2 4,221,457 + Shewana3_3520 0.47 +0.0 4,221,465 - Shewana3_3520 0.49 +0.4 4,221,485 - Shewana3_3520 0.51 +0.6 4,221,527 + Shewana3_3520 0.57 -0.3 4,221,529 - Shewana3_3520 0.57 +1.5 4,221,535 - Shewana3_3520 0.58 -0.9 4,221,535 - Shewana3_3520 0.58 +0.5 4,221,535 - Shewana3_3520 0.58 +0.6 4,221,535 - Shewana3_3520 0.58 -0.9 4,221,569 - Shewana3_3520 0.62 +0.4 4,221,767 - Shewana3_3520 0.89 -0.8 4,221,887 + +1.4 4,221,892 + -0.9 4,221,939 - +0.3 4,221,978 + -0.7 4,222,034 + -0.4 4,222,132 + Shewana3_3521 0.23 +0.2 4,222,140 - Shewana3_3521 0.24 -0.1 4,222,271 - Shewana3_3521 0.46 -0.7 4,222,580 - -1.3
Or see this region's nucleotide sequence