Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3458

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
4,142,878	+		Shewana3_3457	0.19	+0.6
4,142,878	+		Shewana3_3457	0.19	-0.3
4,142,896	-		Shewana3_3457	0.21	-1.6
4,143,067	+		Shewana3_3457	0.40	+0.6
4,143,192	+		Shewana3_3457	0.53	-0.1
4,143,192	+		Shewana3_3457	0.53	-0.7
4,143,201	-		Shewana3_3457	0.54	+0.1
4,143,231	-		Shewana3_3457	0.57	+0.0
4,143,317	+		Shewana3_3457	0.67	-1.8
4,143,324	+		Shewana3_3457	0.68	+0.3
4,143,324	+		Shewana3_3457	0.68	-1.3
4,143,324	-		Shewana3_3457	0.68	+0.4
4,143,325	-		Shewana3_3457	0.68	-0.2
4,143,342	-		Shewana3_3457	0.69	+0.0
4,143,377	+		Shewana3_3457	0.73	-1.1
4,143,380	+		Shewana3_3457	0.74	-1.7
4,143,382	+		Shewana3_3457	0.74	-0.1
4,143,389	+		Shewana3_3457	0.75	-0.4
4,143,390	-		Shewana3_3457	0.75	+0.5
4,143,394	+		Shewana3_3457	0.75	-0.9
4,143,399	+		Shewana3_3457	0.76	-0.7
4,143,440	+		Shewana3_3457	0.80	-0.7
4,143,456	-		Shewana3_3457	0.82	-1.3
4,143,459	+		Shewana3_3457	0.82	-1.9
4,143,459	+		Shewana3_3457	0.82	-0.0
4,143,466	-		Shewana3_3457	0.83	+0.3
4,143,480	+		Shewana3_3457	0.84	-1.5
4,143,480	+		Shewana3_3457	0.84	-0.4
4,143,481	-		Shewana3_3457	0.84	-0.4
4,143,526	-		Shewana3_3457	0.89	-2.1
4,143,526	-		Shewana3_3457	0.89	+0.2
4,143,593	+				+0.5
4,143,708	+				-0.2
4,143,775	+				+0.8
4,143,783	-				-3.6
4,143,828	-				+2.8
4,143,828	-				-2.6
4,143,840	-				-0.8
4,143,858	-				+1.8
4,143,863	+				+0.3
4,143,863	+				-1.6
4,143,871	-				+0.3
4,143,877	+				-1.4
4,143,880	+				-1.6
4,143,880	+				-0.8
4,143,882	+				-0.9
4,143,897	+				+0.1
4,143,906	-				-0.5
4,143,911	-				-2.7
4,143,936	-				-0.5
4,143,960	+				-0.8
4,143,963	-				-1.0
4,144,070	+		Shewana3_3458	0.11	-1.5
4,144,094	+		Shewana3_3458	0.12	-0.3
4,144,108	-		Shewana3_3458	0.13	+0.0
4,144,347	-		Shewana3_3458	0.23	-1.9
4,144,389	-		Shewana3_3458	0.25	+0.1
4,144,537	+		Shewana3_3458	0.32	-1.8
4,144,645	+		Shewana3_3458	0.36	+0.4
4,144,666	-		Shewana3_3458	0.37	+0.1
4,144,666	-		Shewana3_3458	0.37	+0.1
4,144,680	-		Shewana3_3458	0.38	-0.0
4,144,727	+		Shewana3_3458	0.40	-0.2
4,144,735	-		Shewana3_3458	0.40	+0.6
4,144,981	-		Shewana3_3458	0.51	+0.2
4,144,981	-		Shewana3_3458	0.51	-0.9
4,144,999	+		Shewana3_3458	0.52	-0.0
4,145,008	+		Shewana3_3458	0.52	-0.2
4,145,070	-		Shewana3_3458	0.55	+0.6
4,145,143	+		Shewana3_3458	0.58	-1.1
4,145,357	+		Shewana3_3458	0.68	-0.2
4,145,364	+		Shewana3_3458	0.68	-1.4
4,145,365	-		Shewana3_3458	0.68	+0.1
4,145,365	-		Shewana3_3458	0.68	-0.4
4,145,499	+		Shewana3_3458	0.74	-1.4
4,145,595	+		Shewana3_3458	0.78	-0.5
4,145,603	-		Shewana3_3458	0.78	-0.2
4,145,623	-		Shewana3_3458	0.79	-1.3
4,145,640	-		Shewana3_3458	0.80	-0.6
4,145,776	+		Shewana3_3458	0.86	+0.3
4,145,872	-				-2.7
4,145,882	-				-0.8
4,145,884	+				-0.8
4,145,923	+				-0.5
4,145,923	+				-0.3
4,145,976	-				-0.7
4,145,984	+				+0.8
4,145,984	+				+0.7
4,145,992	-				+1.2
4,146,060	+				+0.0
4,146,129	+				-1.4
4,146,137	-				-0.2
4,146,188	+				-0.4
4,146,196	-				+0.5
4,146,208	-				+0.5
4,146,220	+				-1.0
4,146,248	+				-0.2
4,146,256	-				+0.5
4,146,275	+				+0.2
4,146,283	-				+0.5
4,146,283	-				-1.0
4,146,284	-				-0.1
4,146,284	-				+0.0
4,146,284	-				-0.2
4,146,290	+				-1.2
4,146,290	+				+0.8
4,146,290	+				-0.4
4,146,298	-		Shewana3_3459	0.11	+0.4
4,146,298	-		Shewana3_3459	0.11	+1.0
4,146,298	-		Shewana3_3459	0.11	+0.5
4,146,298	-		Shewana3_3459	0.11	-0.3
4,146,298	-		Shewana3_3459	0.11	+0.2
4,146,298	-		Shewana3_3459	0.11	+0.8
4,146,298	-		Shewana3_3459	0.11	-0.6
4,146,369	-		Shewana3_3459	0.22	+0.5
4,146,393	+		Shewana3_3459	0.25	-0.3
4,146,401	-		Shewana3_3459	0.26	-0.3
4,146,401	-		Shewana3_3459	0.26	-0.8
4,146,424	-		Shewana3_3459	0.30	+0.2
4,146,425	+		Shewana3_3459	0.30	-1.0
4,146,426	+		Shewana3_3459	0.30	-0.5
4,146,426	+		Shewana3_3459	0.30	-0.8
4,146,426	+		Shewana3_3459	0.30	-1.1
4,146,426	+		Shewana3_3459	0.30	-0.2
4,146,426	+		Shewana3_3459	0.30	-0.9
4,146,426	+		Shewana3_3459	0.30	-0.8
4,146,432	+		Shewana3_3459	0.31	-1.0
4,146,432	+		Shewana3_3459	0.31	-0.8
4,146,432	+		Shewana3_3459	0.31	-0.5
4,146,434	-		Shewana3_3459	0.31	-0.8
4,146,434	-		Shewana3_3459	0.31	-1.7
4,146,434	-		Shewana3_3459	0.31	-1.8
4,146,434	-		Shewana3_3459	0.31	-1.6
4,146,434	-		Shewana3_3459	0.31	-0.1
4,146,434	-		Shewana3_3459	0.31	-0.4
4,146,434	-		Shewana3_3459	0.31	-1.0
4,146,434	-		Shewana3_3459	0.31	-0.9
4,146,434	-		Shewana3_3459	0.31	-2.4
4,146,440	-		Shewana3_3459	0.32	-1.5
4,146,440	-		Shewana3_3459	0.32	-0.2
4,146,440	-		Shewana3_3459	0.32	-1.2
4,146,474	-		Shewana3_3459	0.37	+0.8
4,146,490	+		Shewana3_3459	0.40	+0.5
4,146,495	+		Shewana3_3459	0.40	-0.8
4,146,694	+		Shewana3_3459	0.70	+0.3
4,146,699	+		Shewana3_3459	0.71	-0.1
4,146,702	-		Shewana3_3459	0.71	-0.6
4,146,702	-		Shewana3_3459	0.71	-1.8
4,146,702	-		Shewana3_3459	0.71	+0.1
4,146,702	-		Shewana3_3459	0.71	-0.4
4,146,844	-				-1.1
4,146,986	+				-0.4
4,146,989	-				+0.7
4,147,055	+				-0.1
4,147,065	+				+0.2
4,147,072	+				+0.4
4,147,073	-				+0.0