Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3357

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
4,026,240	+				+1.1
4,026,240	+				+0.3
4,026,248	-				+1.2
4,026,252	+				-1.1
4,026,321	+				-0.2
4,026,456	-		Shewana3_3355	0.17	+0.5
4,026,473	-		Shewana3_3355	0.21	-0.1
4,026,521	+		Shewana3_3355	0.31	+1.2
4,026,712	-		Shewana3_3355	0.74	-0.2
4,026,842	-				+0.3
4,026,896	-		Shewana3_3356	0.18	-0.8
4,026,903	-		Shewana3_3356	0.20	-0.5
4,026,905	+		Shewana3_3356	0.20	-1.9
4,026,913	-		Shewana3_3356	0.23	-0.5
4,026,913	-		Shewana3_3356	0.23	-1.6
4,026,915	+		Shewana3_3356	0.23	-2.6
4,026,953	-		Shewana3_3356	0.34	-0.0
4,026,954	-		Shewana3_3356	0.35	-0.3
4,027,177	+				-2.1
4,027,177	+				+0.2
4,027,206	-				-0.8
4,027,218	-				-1.1
4,027,249	+				-1.3
4,027,291	-				+1.0
4,027,298	-				-0.5
4,027,337	+				-2.4
4,027,337	+				-1.5
4,027,337	+				-2.7
4,027,414	-		Shewana3_3357	0.13	-1.3
4,027,495	+		Shewana3_3357	0.18	-1.6
4,027,733	+		Shewana3_3357	0.31	-1.0
4,027,784	+		Shewana3_3357	0.33	-3.6
4,027,929	+		Shewana3_3357	0.41	-0.5
4,027,951	+		Shewana3_3357	0.43	-0.5
4,027,951	+		Shewana3_3357	0.43	-0.0
4,027,959	-		Shewana3_3357	0.43	-1.8
4,028,078	+		Shewana3_3357	0.50	-1.0
4,028,188	-		Shewana3_3357	0.56	+0.1
4,028,188	-		Shewana3_3357	0.56	-0.1
4,028,354	+		Shewana3_3357	0.65	+0.8
4,028,367	-		Shewana3_3357	0.65	+1.8
4,028,426	+		Shewana3_3357	0.69	-2.3
4,028,426	+		Shewana3_3357	0.69	+1.8
4,028,528	+		Shewana3_3357	0.74	-1.8
4,028,536	-		Shewana3_3357	0.75	-1.8
4,028,549	+		Shewana3_3357	0.75	-1.2
4,028,597	-		Shewana3_3357	0.78	-0.2
4,028,603	-		Shewana3_3357	0.78	+0.7
4,028,609	-		Shewana3_3357	0.79	+0.1
4,028,737	+		Shewana3_3357	0.85	-0.4
4,028,737	+		Shewana3_3357	0.85	-0.2
4,028,745	-		Shewana3_3357	0.86	+0.2
4,028,761	-		Shewana3_3357	0.87	-0.5
4,028,896	-				-0.2
4,029,043	-				-0.8
4,029,187	-				-0.8
4,029,220	+				-1.1
4,029,230	+				-0.2
4,029,289	+				+0.0
4,029,297	-				+4.6
4,029,300	+				-0.2
4,029,314	-				+0.4
4,029,314	-				-0.3
4,029,436	-		Shewana3_3358	0.24	-0.0
4,029,509	+		Shewana3_3358	0.38	-1.5
4,029,527	-		Shewana3_3358	0.41	-1.5
4,029,551	-		Shewana3_3358	0.45	-0.3
4,029,698	-		Shewana3_3358	0.72	-0.2
4,029,872	+				-0.5
4,029,894	+				+0.2