Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3221
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,863,974 | + | Shewana3_3221 | 0.14 | -2.2 | |
| 3,864,155 | - | Shewana3_3221 | 0.41 | -0.4 | |
| 3,864,166 | - | Shewana3_3221 | 0.42 | +0.3 | |
| 3,864,184 | - | Shewana3_3221 | 0.45 | -0.1 | |
| 3,864,189 | - | Shewana3_3221 | 0.46 | -0.3 | |
| 3,864,638 | - | +0.7 | |||
| 3,864,749 | - | -0.1 | |||
| 3,864,749 | - | -0.1 | |||
| 3,864,896 | + | Shewana3_3222 | 0.12 | -0.5 | |
| 3,864,942 | - | Shewana3_3222 | 0.23 | +3.5 | |
| 3,864,975 | + | Shewana3_3222 | 0.31 | -0.9 | |
| 3,865,089 | + | Shewana3_3222 | 0.57 | -2.3 | |
| 3,865,089 | + | Shewana3_3222 | 0.57 | -0.6 | |
| 3,865,302 | + | +0.3 | |||
| 3,865,378 | + | -2.3 |
Or see this region's nucleotide sequence