Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3117 and Shewana3_3118 are separated by 488 nucleotides Shewana3_3118 and Shewana3_3119 are separated by 37 nucleotides Shewana3_3119 and Shewana3_3120 are separated by 11 nucleotides
Shewana3_3117: Shewana3_3117 - hypothetical protein (RefSeq), at 3,740,245 to 3,741,234
_3117
Shewana3_3118: Shewana3_3118 - hypothetical protein (RefSeq), at 3,741,723 to 3,742,625
_3118
Shewana3_3119: Shewana3_3119 - hypothetical protein (RefSeq), at 3,742,663 to 3,743,322
_3119
Shewana3_3120: Shewana3_3120 - tryptophan halogenase (RefSeq), at 3,743,334 to 3,744,866
_3120
Position (kb)
3741
3742
3743 Strain fitness (log2 ratio)
-1
0
1
2 at 3740.820 kb on - strand, within Shewana3_3117 at 3740.958 kb on + strand, within Shewana3_3117 at 3740.966 kb on - strand, within Shewana3_3117 at 3741.139 kb on - strand at 3741.231 kb on + strand at 3741.476 kb on + strand at 3741.922 kb on + strand, within Shewana3_3118 at 3741.961 kb on + strand, within Shewana3_3118 at 3742.123 kb on + strand, within Shewana3_3118 at 3742.159 kb on - strand, within Shewana3_3118 at 3742.251 kb on + strand, within Shewana3_3118 at 3742.387 kb on + strand, within Shewana3_3118 at 3742.395 kb on - strand, within Shewana3_3118 at 3742.421 kb on - strand, within Shewana3_3118 at 3742.497 kb on - strand, within Shewana3_3118 at 3742.520 kb on + strand, within Shewana3_3118 at 3742.730 kb on + strand, within Shewana3_3119 at 3742.795 kb on - strand, within Shewana3_3119 at 3742.832 kb on + strand, within Shewana3_3119 at 3742.864 kb on + strand, within Shewana3_3119 at 3742.898 kb on - strand, within Shewana3_3119 at 3742.928 kb on - strand, within Shewana3_3119 at 3742.966 kb on + strand, within Shewana3_3119 at 3742.974 kb on - strand, within Shewana3_3119 at 3743.080 kb on + strand, within Shewana3_3119 at 3743.125 kb on + strand, within Shewana3_3119 at 3743.173 kb on + strand, within Shewana3_3119 at 3743.268 kb on - strand at 3743.357 kb on + strand at 3743.369 kb on + strand at 3743.479 kb on + strand at 3743.512 kb on + strand, within Shewana3_3120
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,740,820 - Shewana3_3117 0.58 -1.2 3,740,958 + Shewana3_3117 0.72 +0.8 3,740,966 - Shewana3_3117 0.73 +1.4 3,741,139 - -0.7 3,741,231 + -0.0 3,741,476 + -1.5 3,741,922 + Shewana3_3118 0.22 -0.4 3,741,961 + Shewana3_3118 0.26 +0.9 3,742,123 + Shewana3_3118 0.44 -1.7 3,742,159 - Shewana3_3118 0.48 -0.6 3,742,251 + Shewana3_3118 0.58 -0.6 3,742,387 + Shewana3_3118 0.74 -0.3 3,742,395 - Shewana3_3118 0.74 +0.3 3,742,421 - Shewana3_3118 0.77 -1.0 3,742,497 - Shewana3_3118 0.86 -0.5 3,742,520 + Shewana3_3118 0.88 -1.4 3,742,730 + Shewana3_3119 0.10 +1.5 3,742,795 - Shewana3_3119 0.20 -0.0 3,742,832 + Shewana3_3119 0.26 -0.9 3,742,864 + Shewana3_3119 0.30 -0.6 3,742,898 - Shewana3_3119 0.36 -1.0 3,742,928 - Shewana3_3119 0.40 +1.4 3,742,966 + Shewana3_3119 0.46 -0.0 3,742,974 - Shewana3_3119 0.47 -0.6 3,743,080 + Shewana3_3119 0.63 -0.3 3,743,125 + Shewana3_3119 0.70 +2.1 3,743,173 + Shewana3_3119 0.77 -0.0 3,743,268 - -0.3 3,743,357 + +0.2 3,743,369 + -1.4 3,743,479 + -0.3 3,743,512 + Shewana3_3120 0.12 -0.0
Or see this region's nucleotide sequence