Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3090 and Shewana3_3091 are separated by 52 nucleotides Shewana3_3091 and Shewana3_3092 are separated by 102 nucleotides
Shewana3_3090: Shewana3_3090 - luciferase family protein (RefSeq), at 3,706,474 to 3,707,523
_3090
Shewana3_3091: Shewana3_3091 - 4-aminobutyrate aminotransferase (RefSeq), at 3,707,576 to 3,708,853
_3091
Shewana3_3092: Shewana3_3092 - succinate semialdehyde dehydrogenase (RefSeq), at 3,708,956 to 3,710,404
_3092
Position (kb)
3707
3708
3709 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3706.641 kb on - strand, within Shewana3_3090 at 3706.774 kb on - strand, within Shewana3_3090 at 3706.860 kb on - strand, within Shewana3_3090 at 3707.183 kb on - strand, within Shewana3_3090 at 3707.254 kb on - strand, within Shewana3_3090 at 3707.254 kb on - strand, within Shewana3_3090 at 3707.284 kb on - strand, within Shewana3_3090 at 3707.669 kb on - strand at 3707.802 kb on - strand, within Shewana3_3091 at 3707.937 kb on - strand, within Shewana3_3091 at 3708.221 kb on + strand, within Shewana3_3091 at 3708.231 kb on + strand, within Shewana3_3091 at 3708.474 kb on + strand, within Shewana3_3091 at 3708.687 kb on + strand, within Shewana3_3091 at 3708.687 kb on + strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.695 kb on - strand, within Shewana3_3091 at 3708.780 kb on + strand at 3708.859 kb on - strand at 3709.088 kb on - strand at 3709.217 kb on - strand, within Shewana3_3092 at 3709.461 kb on - strand, within Shewana3_3092 at 3709.473 kb on + strand, within Shewana3_3092 at 3709.510 kb on + strand, within Shewana3_3092 at 3709.787 kb on + strand, within Shewana3_3092 at 3709.833 kb on - strand, within Shewana3_3092
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,706,641 - Shewana3_3090 0.16 -0.4 3,706,774 - Shewana3_3090 0.29 -0.8 3,706,860 - Shewana3_3090 0.37 -0.4 3,707,183 - Shewana3_3090 0.68 -0.3 3,707,254 - Shewana3_3090 0.74 +0.3 3,707,254 - Shewana3_3090 0.74 -0.8 3,707,284 - Shewana3_3090 0.77 -0.6 3,707,669 - -0.5 3,707,802 - Shewana3_3091 0.18 +0.5 3,707,937 - Shewana3_3091 0.28 +0.2 3,708,221 + Shewana3_3091 0.50 +0.4 3,708,231 + Shewana3_3091 0.51 +0.8 3,708,474 + Shewana3_3091 0.70 -1.1 3,708,687 + Shewana3_3091 0.87 -0.0 3,708,687 + Shewana3_3091 0.87 -1.2 3,708,695 - Shewana3_3091 0.88 +0.5 3,708,695 - Shewana3_3091 0.88 +0.5 3,708,695 - Shewana3_3091 0.88 -0.1 3,708,695 - Shewana3_3091 0.88 +0.3 3,708,780 + -0.8 3,708,859 - +0.4 3,709,088 - +1.3 3,709,217 - Shewana3_3092 0.18 -0.0 3,709,461 - Shewana3_3092 0.35 -1.3 3,709,473 + Shewana3_3092 0.36 -2.9 3,709,510 + Shewana3_3092 0.38 -0.5 3,709,787 + Shewana3_3092 0.57 -0.2 3,709,833 - Shewana3_3092 0.61 +0.9
Or see this region's nucleotide sequence