Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2995

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2993 and Shewana3_2994 are separated by 99 nucleotidesShewana3_2994 and Shewana3_2995 are separated by 390 nucleotidesShewana3_2995 and Shewana3_2996 are separated by 156 nucleotides Shewana3_2993: Shewana3_2993 - amino acid ABC transporter periplasmic protein (RefSeq), at 3,598,864 to 3,599,613 _2993 Shewana3_2994: Shewana3_2994 - hypothetical protein (RefSeq), at 3,599,713 to 3,600,021 _2994 Shewana3_2995: Shewana3_2995 - PfpI family intracellular peptidase (RefSeq), at 3,600,412 to 3,600,972 _2995 Shewana3_2996: Shewana3_2996 - band 7 protein (RefSeq), at 3,601,129 to 3,602,907 _2996 Position (kb) 3600 3601Strain fitness (log2 ratio) -2 -1 0 1at 3599.488 kb on + strand, within Shewana3_2993at 3599.550 kb on + strandat 3599.558 kb on - strandat 3599.558 kb on - strandat 3599.707 kb on - strandat 3599.833 kb on + strand, within Shewana3_2994at 3600.515 kb on - strand, within Shewana3_2995at 3600.638 kb on + strand, within Shewana3_2995at 3600.667 kb on - strand, within Shewana3_2995at 3600.876 kb on + strand, within Shewana3_2995at 3600.884 kb on - strand, within Shewana3_2995at 3601.213 kb on + strandat 3601.214 kb on - strandat 3601.597 kb on - strand, within Shewana3_2996at 3601.699 kb on + strand, within Shewana3_2996at 3601.715 kb on - strand, within Shewana3_2996at 3601.717 kb on - strand, within Shewana3_2996

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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3,599,488 + Shewana3_2993 0.83 +0.7
3,599,550 + -2.3
3,599,558 - -1.0
3,599,558 - -1.6
3,599,707 - +0.1
3,599,833 + Shewana3_2994 0.39 -0.6
3,600,515 - Shewana3_2995 0.18 -1.3
3,600,638 + Shewana3_2995 0.40 -0.8
3,600,667 - Shewana3_2995 0.45 -1.0
3,600,876 + Shewana3_2995 0.83 -1.0
3,600,884 - Shewana3_2995 0.84 +1.4
3,601,213 + -0.8
3,601,214 - +0.3
3,601,597 - Shewana3_2996 0.26 +0.7
3,601,699 + Shewana3_2996 0.32 +0.2
3,601,715 - Shewana3_2996 0.33 +0.1
3,601,717 - Shewana3_2996 0.33 +0.4

Or see this region's nucleotide sequence