Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2985
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 3,586,875 | - | +1.3 | |||
| 3,586,907 | - | +0.3 | |||
| 3,586,908 | + | -0.9 | |||
| 3,586,956 | + | -0.4 | |||
| 3,587,077 | + | -1.1 | |||
| 3,587,194 | - | -0.6 | |||
| 3,587,262 | + | -0.1 | |||
| 3,587,423 | - | +0.2 | |||
| 3,587,642 | - | -1.1 | |||
| 3,587,682 | - | +1.5 | |||
| 3,588,013 | - | Shewana3_2985 | 0.26 | +0.8 | |
| 3,588,028 | + | Shewana3_2985 | 0.28 | +2.0 | |
| 3,588,239 | - | Shewana3_2985 | 0.54 | -0.1 | |
| 3,588,249 | - | Shewana3_2985 | 0.56 | +0.6 | |
| 3,588,353 | - | Shewana3_2985 | 0.69 | +0.8 | |
| 3,588,510 | - | Shewana3_2985 | 0.89 | +0.7 | |
| 3,588,786 | - | -0.4 | |||
| 3,588,863 | - | +0.2 | |||
| 3,589,031 | + | +0.5 | |||
| 3,589,116 | - | +0.4 | |||
| 3,589,287 | + | Shewana3_2986 | 0.18 | -0.2 | |
| 3,589,338 | + | Shewana3_2986 | 0.21 | +1.3 |
Or see this region's nucleotide sequence