Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2935 and Shewana3_2936 are separated by 509 nucleotides Shewana3_2936 and Shewana3_2937 are separated by 58 nucleotides Shewana3_2937 and Shewana3_2938 are separated by 306 nucleotides
Shewana3_2935: Shewana3_2935 - 4-alpha-glucanotransferase (RefSeq), at 3,523,935 to 3,526,340
_2935
Shewana3_2936: Shewana3_2936 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 3,526,850 to 3,527,485
_2936
Shewana3_2937: Shewana3_2937 - MarR family transcriptional regulator (RefSeq), at 3,527,544 to 3,528,041
_2937
Shewana3_2938: Shewana3_2938 - iron-containing alcohol dehydrogenase (RefSeq), at 3,528,348 to 3,529,496
_2938
Position (kb)
3526
3527
3528 Strain fitness (log2 ratio)
-1
0
1
2 at 3525.946 kb on + strand, within Shewana3_2935 at 3526.007 kb on + strand, within Shewana3_2935 at 3526.272 kb on + strand at 3526.275 kb on - strand at 3526.371 kb on + strand at 3526.507 kb on - strand at 3526.577 kb on - strand at 3526.964 kb on + strand, within Shewana3_2936 at 3526.977 kb on + strand, within Shewana3_2936 at 3527.015 kb on + strand, within Shewana3_2936 at 3527.040 kb on + strand, within Shewana3_2936 at 3527.273 kb on + strand, within Shewana3_2936 at 3527.328 kb on + strand, within Shewana3_2936 at 3527.328 kb on + strand, within Shewana3_2936 at 3527.336 kb on - strand, within Shewana3_2936 at 3527.376 kb on - strand, within Shewana3_2936 at 3527.383 kb on + strand, within Shewana3_2936 at 3527.388 kb on + strand, within Shewana3_2936 at 3527.391 kb on - strand, within Shewana3_2936 at 3527.508 kb on + strand at 3527.585 kb on - strand at 3527.602 kb on + strand, within Shewana3_2937 at 3527.980 kb on + strand, within Shewana3_2937 at 3528.259 kb on - strand at 3528.473 kb on - strand, within Shewana3_2938
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,525,946 + Shewana3_2935 0.84 -0.8 3,526,007 + Shewana3_2935 0.86 -1.1 3,526,272 + -1.0 3,526,275 - -0.7 3,526,371 + -0.8 3,526,507 - -0.8 3,526,577 - -0.8 3,526,964 + Shewana3_2936 0.18 -1.3 3,526,977 + Shewana3_2936 0.20 -1.3 3,527,015 + Shewana3_2936 0.26 +0.5 3,527,040 + Shewana3_2936 0.30 -0.4 3,527,273 + Shewana3_2936 0.67 +1.0 3,527,328 + Shewana3_2936 0.75 +0.4 3,527,328 + Shewana3_2936 0.75 +0.4 3,527,336 - Shewana3_2936 0.76 +0.1 3,527,376 - Shewana3_2936 0.83 -1.1 3,527,383 + Shewana3_2936 0.84 +0.4 3,527,388 + Shewana3_2936 0.85 +0.7 3,527,391 - Shewana3_2936 0.85 -0.4 3,527,508 + -0.1 3,527,585 - +1.0 3,527,602 + Shewana3_2937 0.12 -1.4 3,527,980 + Shewana3_2937 0.88 +1.9 3,528,259 - +1.3 3,528,473 - Shewana3_2938 0.11 -0.1
Or see this region's nucleotide sequence