Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2926 and Shewana3_2927 are separated by 37 nucleotides Shewana3_2927 and Shewana3_2928 are separated by 108 nucleotides
Shewana3_2926: Shewana3_2926 - extracellular solute-binding protein (RefSeq), at 3,507,066 to 3,507,842
_2926
Shewana3_2927: Shewana3_2927 - cobalamin synthesis protein, P47K (RefSeq), at 3,507,880 to 3,508,992
_2927
Shewana3_2928: Shewana3_2928 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,509,101 to 3,510,564
_2928
Position (kb)
3507
3508
3509 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3507.141 kb on - strand at 3507.189 kb on + strand, within Shewana3_2926 at 3507.213 kb on + strand, within Shewana3_2926 at 3507.301 kb on - strand, within Shewana3_2926 at 3507.432 kb on - strand, within Shewana3_2926 at 3507.569 kb on - strand, within Shewana3_2926 at 3507.763 kb on + strand, within Shewana3_2926 at 3507.763 kb on + strand, within Shewana3_2926 at 3507.800 kb on + strand at 3508.096 kb on + strand, within Shewana3_2927 at 3508.098 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.347 kb on + strand, within Shewana3_2927 at 3508.355 kb on - strand, within Shewana3_2927 at 3508.355 kb on - strand, within Shewana3_2927 at 3508.427 kb on - strand, within Shewana3_2927 at 3508.596 kb on + strand, within Shewana3_2927 at 3508.680 kb on - strand, within Shewana3_2927 at 3509.093 kb on - strand at 3509.093 kb on - strand at 3509.187 kb on - strand at 3509.222 kb on + strand at 3509.523 kb on + strand, within Shewana3_2928 at 3509.533 kb on - strand, within Shewana3_2928 at 3509.577 kb on - strand, within Shewana3_2928 at 3509.850 kb on + strand, within Shewana3_2928
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,507,141 - -0.4 3,507,189 + Shewana3_2926 0.16 +0.2 3,507,213 + Shewana3_2926 0.19 -0.5 3,507,301 - Shewana3_2926 0.30 +0.9 3,507,432 - Shewana3_2926 0.47 -1.1 3,507,569 - Shewana3_2926 0.65 +0.1 3,507,763 + Shewana3_2926 0.90 -1.4 3,507,763 + Shewana3_2926 0.90 -0.3 3,507,800 + +0.6 3,508,096 + Shewana3_2927 0.19 -0.1 3,508,098 + Shewana3_2927 0.20 -1.0 3,508,347 + Shewana3_2927 0.42 -1.0 3,508,347 + Shewana3_2927 0.42 -0.7 3,508,347 + Shewana3_2927 0.42 +1.6 3,508,347 + Shewana3_2927 0.42 -2.0 3,508,355 - Shewana3_2927 0.43 +0.9 3,508,355 - Shewana3_2927 0.43 +3.2 3,508,427 - Shewana3_2927 0.49 +0.2 3,508,596 + Shewana3_2927 0.64 -0.0 3,508,680 - Shewana3_2927 0.72 -2.2 3,509,093 - +0.8 3,509,093 - +0.5 3,509,187 - +0.8 3,509,222 + +0.5 3,509,523 + Shewana3_2928 0.29 +0.0 3,509,533 - Shewana3_2928 0.30 -0.4 3,509,577 - Shewana3_2928 0.33 -0.0 3,509,850 + Shewana3_2928 0.51 +0.9
Or see this region's nucleotide sequence