Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2915

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2913 and Shewana3_2914 are separated by 1 nucleotidesShewana3_2914 and Shewana3_2915 are separated by 197 nucleotidesShewana3_2915 and Shewana3_2916 overlap by 1 nucleotides Shewana3_2913: Shewana3_2913 - hypothetical protein (RefSeq), at 3,488,666 to 3,489,565 _2913 Shewana3_2914: Shewana3_2914 - Ion transport 2 domain-containing protein (RefSeq), at 3,489,567 to 3,489,977 _2914 Shewana3_2915: Shewana3_2915 - phage integrase family protein (RefSeq), at 3,490,175 to 3,491,653 _2915 Shewana3_2916: Shewana3_2916 - hypothetical protein (RefSeq), at 3,491,653 to 3,494,322 _2916 Position (kb) 3490 3491 3492Strain fitness (log2 ratio) -1 0 1 2at 3489.350 kb on + strand, within Shewana3_2913at 3489.371 kb on + strand, within Shewana3_2913at 3489.732 kb on - strand, within Shewana3_2914at 3489.734 kb on + strand, within Shewana3_2914at 3490.003 kb on + strandat 3490.011 kb on - strandat 3490.011 kb on - strandat 3490.045 kb on - strandat 3490.728 kb on + strand, within Shewana3_2915at 3490.881 kb on + strand, within Shewana3_2915at 3490.904 kb on + strand, within Shewana3_2915at 3491.067 kb on + strand, within Shewana3_2915at 3491.414 kb on - strandat 3491.470 kb on + strand, within Shewana3_2915at 3491.480 kb on + strand, within Shewana3_2915at 3491.611 kb on + strandat 3491.886 kb on + strandat 3491.894 kb on - strandat 3491.927 kb on - strand, within Shewana3_2916at 3491.927 kb on - strand, within Shewana3_2916at 3492.117 kb on - strand, within Shewana3_2916at 3492.126 kb on - strand, within Shewana3_2916at 3492.288 kb on + strand, within Shewana3_2916at 3492.426 kb on + strand, within Shewana3_2916at 3492.473 kb on + strand, within Shewana3_2916

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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3,489,350 + Shewana3_2913 0.76 -0.4
3,489,371 + Shewana3_2913 0.78 -1.0
3,489,732 - Shewana3_2914 0.40 -1.5
3,489,734 + Shewana3_2914 0.41 -1.4
3,490,003 + -1.1
3,490,011 - -0.3
3,490,011 - -1.1
3,490,045 - -0.8
3,490,728 + Shewana3_2915 0.37 +0.7
3,490,881 + Shewana3_2915 0.48 +0.8
3,490,904 + Shewana3_2915 0.49 +2.5
3,491,067 + Shewana3_2915 0.60 +0.0
3,491,414 - +1.0
3,491,470 + Shewana3_2915 0.88 -1.7
3,491,480 + Shewana3_2915 0.88 -1.6
3,491,611 + +0.2
3,491,886 + -1.1
3,491,894 - +0.4
3,491,927 - Shewana3_2916 0.10 +1.0
3,491,927 - Shewana3_2916 0.10 +0.4
3,492,117 - Shewana3_2916 0.17 +2.0
3,492,126 - Shewana3_2916 0.18 +2.0
3,492,288 + Shewana3_2916 0.24 +1.3
3,492,426 + Shewana3_2916 0.29 -1.1
3,492,473 + Shewana3_2916 0.31 +0.0

Or see this region's nucleotide sequence