Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2759 and Shewana3_2760 are separated by 129 nucleotides Shewana3_2760 and Shewana3_2761 are separated by 427 nucleotides
Shewana3_2759: Shewana3_2759 - hypothetical protein (RefSeq), at 3,295,045 to 3,295,941
_2759
Shewana3_2760: Shewana3_2760 - ABC transporter related (RefSeq), at 3,296,071 to 3,297,711
_2760
Shewana3_2761: Shewana3_2761 - copper-translocating P-type ATPase (RefSeq), at 3,298,139 to 3,300,400
_2761
Position (kb)
3296
3297
3298 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3295.402 kb on - strand, within Shewana3_2759 at 3295.485 kb on - strand, within Shewana3_2759 at 3295.553 kb on + strand, within Shewana3_2759 at 3295.589 kb on + strand, within Shewana3_2759 at 3295.789 kb on + strand, within Shewana3_2759 at 3295.858 kb on - strand at 3295.889 kb on + strand at 3295.892 kb on - strand at 3296.005 kb on - strand at 3296.005 kb on - strand at 3296.923 kb on + strand, within Shewana3_2760 at 3296.976 kb on + strand, within Shewana3_2760 at 3297.390 kb on + strand, within Shewana3_2760 at 3297.413 kb on - strand, within Shewana3_2760 at 3297.680 kb on + strand at 3297.716 kb on + strand at 3297.957 kb on - strand at 3297.983 kb on - strand at 3298.003 kb on + strand at 3298.031 kb on - strand at 3298.153 kb on + strand at 3298.241 kb on - strand at 3298.441 kb on + strand, within Shewana3_2761 at 3298.480 kb on + strand, within Shewana3_2761 at 3298.568 kb on + strand, within Shewana3_2761 at 3298.627 kb on + strand, within Shewana3_2761 at 3298.680 kb on + strand, within Shewana3_2761
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,295,402 - Shewana3_2759 0.40 -0.5 3,295,485 - Shewana3_2759 0.49 +1.8 3,295,553 + Shewana3_2759 0.57 +0.1 3,295,589 + Shewana3_2759 0.61 +0.2 3,295,789 + Shewana3_2759 0.83 +0.8 3,295,858 - -1.6 3,295,889 + +1.1 3,295,892 - +2.2 3,296,005 - -2.2 3,296,005 - -0.2 3,296,923 + Shewana3_2760 0.52 -0.4 3,296,976 + Shewana3_2760 0.55 +2.2 3,297,390 + Shewana3_2760 0.80 +0.2 3,297,413 - Shewana3_2760 0.82 -0.4 3,297,680 + +0.8 3,297,716 + -0.8 3,297,957 - +0.5 3,297,983 - -0.2 3,298,003 + +1.0 3,298,031 - -1.4 3,298,153 + -1.7 3,298,241 - +0.5 3,298,441 + Shewana3_2761 0.13 +0.7 3,298,480 + Shewana3_2761 0.15 +0.2 3,298,568 + Shewana3_2761 0.19 -0.2 3,298,627 + Shewana3_2761 0.22 +0.2 3,298,680 + Shewana3_2761 0.24 +1.2
Or see this region's nucleotide sequence