Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2754

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2753 and Shewana3_2754 are separated by 10 nucleotidesShewana3_2754 and Shewana3_2755 are separated by 360 nucleotides Shewana3_2753: Shewana3_2753 - hypothetical protein (RefSeq), at 3,284,552 to 3,285,409 _2753 Shewana3_2754: Shewana3_2754 - hypothetical protein (RefSeq), at 3,285,420 to 3,286,748 _2754 Shewana3_2755: Shewana3_2755 - transcriptional regulator (RefSeq), at 3,287,109 to 3,290,351 _2755 Position (kb) 3285 3286 3287Strain fitness (log2 ratio) -2 -1 0 1at 3284.489 kb on + strandat 3284.489 kb on + strandat 3284.497 kb on - strandat 3284.519 kb on - strandat 3284.557 kb on + strandat 3284.576 kb on - strandat 3284.648 kb on - strand, within Shewana3_2753at 3284.800 kb on + strand, within Shewana3_2753at 3284.808 kb on + strand, within Shewana3_2753at 3284.808 kb on - strand, within Shewana3_2753at 3284.811 kb on - strand, within Shewana3_2753at 3284.923 kb on + strand, within Shewana3_2753at 3284.957 kb on - strand, within Shewana3_2753at 3285.130 kb on + strand, within Shewana3_2753at 3285.341 kb on + strandat 3285.349 kb on - strandat 3285.391 kb on + strandat 3285.489 kb on + strandat 3285.548 kb on - strandat 3285.560 kb on - strand, within Shewana3_2754at 3285.606 kb on + strand, within Shewana3_2754at 3285.621 kb on - strand, within Shewana3_2754at 3285.803 kb on - strand, within Shewana3_2754at 3285.968 kb on - strand, within Shewana3_2754at 3285.968 kb on - strand, within Shewana3_2754at 3286.203 kb on + strand, within Shewana3_2754at 3286.208 kb on + strand, within Shewana3_2754at 3286.247 kb on + strand, within Shewana3_2754at 3286.293 kb on + strand, within Shewana3_2754at 3286.301 kb on - strand, within Shewana3_2754at 3286.323 kb on - strand, within Shewana3_2754at 3286.352 kb on - strand, within Shewana3_2754at 3286.371 kb on + strand, within Shewana3_2754at 3286.474 kb on + strand, within Shewana3_2754at 3286.509 kb on + strand, within Shewana3_2754at 3286.683 kb on - strandat 3286.893 kb on - strandat 3287.028 kb on - strandat 3287.196 kb on + strandat 3287.386 kb on + strandat 3287.559 kb on - strand, within Shewana3_2755at 3287.672 kb on + strand, within Shewana3_2755at 3287.711 kb on + strand, within Shewana3_2755at 3287.746 kb on - strand, within Shewana3_2755

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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3,284,489 + -0.0
3,284,489 + +0.1
3,284,497 - -0.2
3,284,519 - -0.5
3,284,557 + +0.6
3,284,576 - -0.4
3,284,648 - Shewana3_2753 0.11 -0.4
3,284,800 + Shewana3_2753 0.29 -0.7
3,284,808 + Shewana3_2753 0.30 -1.6
3,284,808 - Shewana3_2753 0.30 -0.2
3,284,811 - Shewana3_2753 0.30 -0.5
3,284,923 + Shewana3_2753 0.43 +0.3
3,284,957 - Shewana3_2753 0.47 +0.1
3,285,130 + Shewana3_2753 0.67 -2.6
3,285,341 + -0.1
3,285,349 - -1.0
3,285,391 + +1.2
3,285,489 + +0.8
3,285,548 - -1.8
3,285,560 - Shewana3_2754 0.11 -0.2
3,285,606 + Shewana3_2754 0.14 -1.4
3,285,621 - Shewana3_2754 0.15 +0.1
3,285,803 - Shewana3_2754 0.29 -0.1
3,285,968 - Shewana3_2754 0.41 +0.6
3,285,968 - Shewana3_2754 0.41 -0.3
3,286,203 + Shewana3_2754 0.59 +0.8
3,286,208 + Shewana3_2754 0.59 +0.4
3,286,247 + Shewana3_2754 0.62 +0.2
3,286,293 + Shewana3_2754 0.66 +1.6
3,286,301 - Shewana3_2754 0.66 -0.1
3,286,323 - Shewana3_2754 0.68 +0.5
3,286,352 - Shewana3_2754 0.70 +0.4
3,286,371 + Shewana3_2754 0.72 -0.7
3,286,474 + Shewana3_2754 0.79 -0.1
3,286,509 + Shewana3_2754 0.82 +0.2
3,286,683 - +0.3
3,286,893 - +1.6
3,287,028 - +0.5
3,287,196 + +0.5
3,287,386 + -1.8
3,287,559 - Shewana3_2755 0.14 -0.6
3,287,672 + Shewana3_2755 0.17 +0.2
3,287,711 + Shewana3_2755 0.19 +0.6
3,287,746 - Shewana3_2755 0.20 -2.3

Or see this region's nucleotide sequence