Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2712 and Shewana3_2713 are separated by 85 nucleotides Shewana3_2713 and Shewana3_2714 overlap by 1 nucleotides
Shewana3_2712: Shewana3_2712 - 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq), at 3,241,383 to 3,242,567
_2712
Shewana3_2713: Shewana3_2713 - peptide synthase (RefSeq), at 3,242,653 to 3,244,479
_2713
Shewana3_2714: Shewana3_2714 - alpha/beta hydrolase fold (RefSeq), at 3,244,479 to 3,245,441
_2714
Position (kb)
3242
3243
3244
3245 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3242.233 kb on - strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.281 kb on + strand, within Shewana3_2712 at 3242.371 kb on + strand, within Shewana3_2712 at 3242.961 kb on + strand, within Shewana3_2713 at 3243.089 kb on - strand, within Shewana3_2713 at 3243.167 kb on - strand, within Shewana3_2713 at 3243.236 kb on + strand, within Shewana3_2713 at 3243.263 kb on - strand, within Shewana3_2713 at 3243.534 kb on - strand, within Shewana3_2713 at 3243.839 kb on + strand, within Shewana3_2713 at 3244.431 kb on - strand at 3244.510 kb on + strand at 3244.576 kb on + strand, within Shewana3_2714 at 3244.584 kb on - strand, within Shewana3_2714 at 3244.978 kb on - strand, within Shewana3_2714 at 3244.983 kb on - strand, within Shewana3_2714 at 3245.028 kb on - strand, within Shewana3_2714 at 3245.091 kb on - strand, within Shewana3_2714 at 3245.132 kb on - strand, within Shewana3_2714 at 3245.174 kb on - strand, within Shewana3_2714 at 3245.206 kb on - strand, within Shewana3_2714 at 3245.367 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,242,233 - Shewana3_2712 0.72 -2.1 3,242,281 + Shewana3_2712 0.76 -1.6 3,242,281 + Shewana3_2712 0.76 +0.2 3,242,371 + Shewana3_2712 0.83 +2.2 3,242,961 + Shewana3_2713 0.17 -0.8 3,243,089 - Shewana3_2713 0.24 -0.7 3,243,167 - Shewana3_2713 0.28 -2.4 3,243,236 + Shewana3_2713 0.32 -2.0 3,243,263 - Shewana3_2713 0.33 -0.0 3,243,534 - Shewana3_2713 0.48 +0.6 3,243,839 + Shewana3_2713 0.65 -0.1 3,244,431 - -0.5 3,244,510 + -0.5 3,244,576 + Shewana3_2714 0.10 +2.2 3,244,584 - Shewana3_2714 0.11 -0.4 3,244,978 - Shewana3_2714 0.52 -0.5 3,244,983 - Shewana3_2714 0.52 -0.6 3,245,028 - Shewana3_2714 0.57 -2.4 3,245,091 - Shewana3_2714 0.64 -0.6 3,245,132 - Shewana3_2714 0.68 +1.6 3,245,174 - Shewana3_2714 0.72 +0.1 3,245,206 - Shewana3_2714 0.75 -1.1 3,245,367 - -1.0
Or see this region's nucleotide sequence