Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2688 and Shewana3_2689 are separated by 82 nucleotides Shewana3_2689 and Shewana3_2690 are separated by 142 nucleotides Shewana3_2690 and Shewana3_2691 are separated by 13 nucleotides
Shewana3_2688: Shewana3_2688 - hypothetical protein (RefSeq), at 3,216,033 to 3,216,488
_2688
Shewana3_2689: Shewana3_2689 - hypothetical protein (RefSeq), at 3,216,571 to 3,216,978
_2689
Shewana3_2690: Shewana3_2690 - short chain dehydrogenase (RefSeq), at 3,217,121 to 3,217,888
_2690
Shewana3_2691: Shewana3_2691 - DNA-O6-methylguanine--protein-cysteine S-methyltransferase / transcriptional regulator Ada (RefSeq), at 3,217,902 to 3,218,795
_2691
Position (kb)
3216
3217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3215.615 kb on - strand at 3215.874 kb on + strand at 3215.882 kb on - strand at 3215.882 kb on - strand at 3215.977 kb on - strand at 3216.096 kb on + strand, within Shewana3_2688 at 3216.143 kb on + strand, within Shewana3_2688 at 3216.263 kb on - strand, within Shewana3_2688 at 3216.263 kb on - strand, within Shewana3_2688 at 3216.522 kb on + strand at 3216.531 kb on - strand at 3216.665 kb on + strand, within Shewana3_2689 at 3216.665 kb on + strand, within Shewana3_2689 at 3216.665 kb on + strand, within Shewana3_2689 at 3216.730 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.817 kb on + strand, within Shewana3_2689 at 3216.825 kb on - strand, within Shewana3_2689 at 3216.825 kb on - strand, within Shewana3_2689 at 3216.973 kb on + strand at 3216.973 kb on + strand at 3216.988 kb on + strand at 3217.057 kb on + strand at 3217.183 kb on - strand at 3217.275 kb on - strand, within Shewana3_2690 at 3217.321 kb on + strand, within Shewana3_2690 at 3217.328 kb on - strand, within Shewana3_2690 at 3217.573 kb on - strand, within Shewana3_2690 at 3217.659 kb on + strand, within Shewana3_2690 at 3217.876 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 3,215,615 - -0.6 3,215,874 + +0.6 3,215,882 - -1.2 3,215,882 - -0.0 3,215,977 - -0.7 3,216,096 + Shewana3_2688 0.14 -0.6 3,216,143 + Shewana3_2688 0.24 +0.2 3,216,263 - Shewana3_2688 0.50 -1.8 3,216,263 - Shewana3_2688 0.50 -1.4 3,216,522 + +0.9 3,216,531 - -2.9 3,216,665 + Shewana3_2689 0.23 -0.4 3,216,665 + Shewana3_2689 0.23 -1.9 3,216,665 + Shewana3_2689 0.23 -0.1 3,216,730 + Shewana3_2689 0.39 -0.4 3,216,817 + Shewana3_2689 0.60 -0.6 3,216,817 + Shewana3_2689 0.60 -0.2 3,216,817 + Shewana3_2689 0.60 -0.9 3,216,817 + Shewana3_2689 0.60 -0.4 3,216,817 + Shewana3_2689 0.60 +0.7 3,216,817 + Shewana3_2689 0.60 -0.4 3,216,825 - Shewana3_2689 0.62 -0.1 3,216,825 - Shewana3_2689 0.62 +2.2 3,216,973 + -1.3 3,216,973 + +0.7 3,216,988 + +0.4 3,217,057 + -0.2 3,217,183 - -1.1 3,217,275 - Shewana3_2690 0.20 -0.1 3,217,321 + Shewana3_2690 0.26 -0.0 3,217,328 - Shewana3_2690 0.27 -0.6 3,217,573 - Shewana3_2690 0.59 +0.2 3,217,659 + Shewana3_2690 0.70 +0.1 3,217,876 + +1.2
Or see this region's nucleotide sequence