Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2424

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2423 and Shewana3_2424 are separated by 66 nucleotidesShewana3_2424 and Shewana3_2425 are separated by 580 nucleotides Shewana3_2423: Shewana3_2423 - peptidase M23B (RefSeq), at 2,905,409 to 2,906,329 _2423 Shewana3_2424: Shewana3_2424 - isocitrate dehydrogenase (NADP(+)) (RefSeq), at 2,906,396 to 2,907,271 _2424 Shewana3_2425: Shewana3_2425 - di-haem cytochrome c peroxidase (RefSeq), at 2,907,852 to 2,908,853 _2425 Position (kb) 2906 2907 2908Strain fitness (log2 ratio) -1 0 1 2at 2905.641 kb on + strand, within Shewana3_2423at 2905.660 kb on + strand, within Shewana3_2423at 2905.915 kb on - strand, within Shewana3_2423at 2906.004 kb on - strand, within Shewana3_2423at 2906.230 kb on - strand, within Shewana3_2423at 2906.657 kb on + strand, within Shewana3_2424at 2906.770 kb on - strand, within Shewana3_2424at 2906.863 kb on + strand, within Shewana3_2424at 2906.892 kb on + strand, within Shewana3_2424at 2906.966 kb on + strand, within Shewana3_2424at 2906.995 kb on - strand, within Shewana3_2424at 2907.016 kb on - strand, within Shewana3_2424at 2907.016 kb on - strand, within Shewana3_2424at 2907.109 kb on + strand, within Shewana3_2424at 2907.165 kb on - strand, within Shewana3_2424at 2907.342 kb on + strandat 2907.406 kb on - strandat 2907.595 kb on - strandat 2907.636 kb on + strandat 2907.888 kb on - strandat 2908.123 kb on - strand, within Shewana3_2425at 2908.180 kb on + strand, within Shewana3_2425

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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2,905,641 + Shewana3_2423 0.25 -0.4
2,905,660 + Shewana3_2423 0.27 +0.7
2,905,915 - Shewana3_2423 0.55 +0.7
2,906,004 - Shewana3_2423 0.65 +0.4
2,906,230 - Shewana3_2423 0.89 +0.6
2,906,657 + Shewana3_2424 0.30 +0.7
2,906,770 - Shewana3_2424 0.43 +1.5
2,906,863 + Shewana3_2424 0.53 +2.3
2,906,892 + Shewana3_2424 0.57 +0.7
2,906,966 + Shewana3_2424 0.65 +2.3
2,906,995 - Shewana3_2424 0.68 +0.9
2,907,016 - Shewana3_2424 0.71 +1.8
2,907,016 - Shewana3_2424 0.71 +1.7
2,907,109 + Shewana3_2424 0.81 +1.3
2,907,165 - Shewana3_2424 0.88 +0.1
2,907,342 + -0.1
2,907,406 - +0.4
2,907,595 - +0.4
2,907,636 + +1.3
2,907,888 - +0.7
2,908,123 - Shewana3_2425 0.27 +0.3
2,908,180 + Shewana3_2425 0.33 -0.7

Or see this region's nucleotide sequence