Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2411 and Shewana3_2412 are separated by 231 nucleotides Shewana3_2412 and Shewana3_2413 are separated by 32 nucleotides
Shewana3_2411: Shewana3_2411 - OmpA/MotB domain-containing protein (RefSeq), at 2,891,101 to 2,891,895
_2411
Shewana3_2412: Shewana3_2412 - two component transcriptional regulator (RefSeq), at 2,892,127 to 2,892,819
_2412
Shewana3_2413: Shewana3_2413 - ATPase domain-containing protein (RefSeq), at 2,892,852 to 2,895,011
_2413
Position (kb)
2892
2893 Strain fitness (log2 ratio)
-2
-1
0
1 at 2891.154 kb on - strand at 2891.159 kb on - strand at 2891.221 kb on + strand, within Shewana3_2411 at 2891.374 kb on + strand, within Shewana3_2411 at 2891.461 kb on - strand, within Shewana3_2411 at 2892.216 kb on - strand, within Shewana3_2412 at 2892.319 kb on - strand, within Shewana3_2412 at 2892.350 kb on - strand, within Shewana3_2412 at 2892.457 kb on - strand, within Shewana3_2412 at 2892.620 kb on - strand, within Shewana3_2412 at 2892.670 kb on - strand, within Shewana3_2412 at 2892.710 kb on - strand, within Shewana3_2412 at 2892.793 kb on + strand at 2893.004 kb on - strand at 2893.015 kb on + strand at 2893.023 kb on - strand at 2893.219 kb on + strand, within Shewana3_2413 at 2893.250 kb on - strand, within Shewana3_2413 at 2893.508 kb on - strand, within Shewana3_2413 at 2893.772 kb on + strand, within Shewana3_2413 at 2893.788 kb on - strand, within Shewana3_2413
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 2,891,154 - +0.2 2,891,159 - -0.2 2,891,221 + Shewana3_2411 0.15 -0.0 2,891,374 + Shewana3_2411 0.34 -0.2 2,891,461 - Shewana3_2411 0.45 +0.1 2,892,216 - Shewana3_2412 0.13 +0.7 2,892,319 - Shewana3_2412 0.28 +0.7 2,892,350 - Shewana3_2412 0.32 -0.5 2,892,457 - Shewana3_2412 0.48 +1.3 2,892,620 - Shewana3_2412 0.71 -1.5 2,892,670 - Shewana3_2412 0.78 -1.9 2,892,710 - Shewana3_2412 0.84 +0.3 2,892,793 + -1.1 2,893,004 - -1.2 2,893,015 + +0.7 2,893,023 - +1.3 2,893,219 + Shewana3_2413 0.17 -0.0 2,893,250 - Shewana3_2413 0.18 +0.4 2,893,508 - Shewana3_2413 0.30 -0.9 2,893,772 + Shewana3_2413 0.43 -0.0 2,893,788 - Shewana3_2413 0.43 -1.0
Or see this region's nucleotide sequence