Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2405 and Shewana3_2406 are separated by 239 nucleotides Shewana3_2406 and Shewana3_2407 are separated by 60 nucleotides
Shewana3_2405: Shewana3_2405 - alpha-L-glutamate ligase (RefSeq), at 2,882,821 to 2,883,837
_2405
Shewana3_2406: Shewana3_2406 - hypothetical protein (RefSeq), at 2,884,077 to 2,885,000
_2406
Shewana3_2407: Shewana3_2407 - peptidase M28 (RefSeq), at 2,885,061 to 2,886,686
_2407
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2883.101 kb on + strand, within Shewana3_2405 at 2883.299 kb on + strand, within Shewana3_2405 at 2883.378 kb on + strand, within Shewana3_2405 at 2883.770 kb on - strand at 2884.183 kb on + strand, within Shewana3_2406 at 2884.254 kb on - strand, within Shewana3_2406 at 2884.367 kb on + strand, within Shewana3_2406 at 2884.474 kb on - strand at 2884.492 kb on - strand, within Shewana3_2406 at 2884.528 kb on - strand, within Shewana3_2406 at 2884.572 kb on - strand, within Shewana3_2406 at 2884.603 kb on + strand, within Shewana3_2406 at 2884.819 kb on + strand, within Shewana3_2406 at 2884.880 kb on - strand, within Shewana3_2406 at 2885.012 kb on + strand at 2885.084 kb on - strand at 2885.531 kb on + strand, within Shewana3_2407 at 2885.577 kb on - strand, within Shewana3_2407 at 2885.609 kb on - strand, within Shewana3_2407 at 2885.646 kb on + strand, within Shewana3_2407 at 2885.661 kb on - strand, within Shewana3_2407 at 2885.682 kb on - strand, within Shewana3_2407 at 2885.710 kb on + strand, within Shewana3_2407 at 2885.710 kb on + strand, within Shewana3_2407 at 2885.729 kb on - strand, within Shewana3_2407 at 2885.785 kb on + strand, within Shewana3_2407 at 2885.890 kb on - strand, within Shewana3_2407
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 2,883,101 + Shewana3_2405 0.28 -0.4 2,883,299 + Shewana3_2405 0.47 +0.2 2,883,378 + Shewana3_2405 0.55 +1.9 2,883,770 - -1.7 2,884,183 + Shewana3_2406 0.11 +1.3 2,884,254 - Shewana3_2406 0.19 +0.3 2,884,367 + Shewana3_2406 0.31 -1.3 2,884,474 - +1.3 2,884,492 - Shewana3_2406 0.45 +1.3 2,884,528 - Shewana3_2406 0.49 +0.1 2,884,572 - Shewana3_2406 0.54 -1.6 2,884,603 + Shewana3_2406 0.57 -1.4 2,884,819 + Shewana3_2406 0.80 -1.4 2,884,880 - Shewana3_2406 0.87 -2.4 2,885,012 + +0.8 2,885,084 - +1.2 2,885,531 + Shewana3_2407 0.29 -0.0 2,885,577 - Shewana3_2407 0.32 +1.4 2,885,609 - Shewana3_2407 0.34 +0.6 2,885,646 + Shewana3_2407 0.36 -0.9 2,885,661 - Shewana3_2407 0.37 +0.4 2,885,682 - Shewana3_2407 0.38 +1.2 2,885,710 + Shewana3_2407 0.40 +0.7 2,885,710 + Shewana3_2407 0.40 +2.3 2,885,729 - Shewana3_2407 0.41 +1.1 2,885,785 + Shewana3_2407 0.45 +0.7 2,885,890 - Shewana3_2407 0.51 -0.2
Or see this region's nucleotide sequence