Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2172

Experiment: Spectinomycin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2171 and Shewana3_2172 are separated by 65 nucleotidesShewana3_2172 and Shewana3_2173 overlap by 8 nucleotidesShewana3_2173 and Shewana3_2174 are separated by 66 nucleotides Shewana3_2171: Shewana3_2171 - electron transport complex, RnfABCDGE type, D subunit (RefSeq), at 2,604,281 to 2,605,330 _2171 Shewana3_2172: Shewana3_2172 - electron transport complex protein RnfG (RefSeq), at 2,605,396 to 2,606,022 _2172 Shewana3_2173: Shewana3_2173 - electron transport complex RsxE subunit (RefSeq), at 2,606,015 to 2,606,713 _2173 Shewana3_2174: Shewana3_2174 - DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq), at 2,606,780 to 2,607,415 _2174 Position (kb) 2605 2606 2607Strain fitness (log2 ratio) -1 0 1 2at 2606.641 kb on + strand, within Shewana3_2173at 2606.950 kb on + strand, within Shewana3_2174at 2606.952 kb on + strand, within Shewana3_2174

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
remove
2,606,641 + Shewana3_2173 0.90 +1.5
2,606,950 + Shewana3_2174 0.27 -0.1
2,606,952 + Shewana3_2174 0.27 +2.5

Or see this region's nucleotide sequence