Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2116

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2114 and Shewana3_2115 are separated by 55 nucleotidesShewana3_2115 and Shewana3_2116 are separated by 142 nucleotidesShewana3_2116 and Shewana3_2117 are separated by 77 nucleotides Shewana3_2114: Shewana3_2114 - hypothetical protein (RefSeq), at 2,538,054 to 2,538,746 _2114 Shewana3_2115: Shewana3_2115 - fumarate/nitrate reduction transcriptional regulator (RefSeq), at 2,538,802 to 2,539,554 _2115 Shewana3_2116: Shewana3_2116 - universal stress protein UspE (RefSeq), at 2,539,697 to 2,540,629 _2116 Shewana3_2117: Shewana3_2117 - PP-loop domain-containing protein (RefSeq), at 2,540,707 to 2,541,675 _2117 Position (kb) 2539 2540 2541Strain fitness (log2 ratio) -1 0 1 2at 2538.748 kb on - strandat 2539.154 kb on + strand, within Shewana3_2115at 2539.554 kb on + strandat 2539.666 kb on + strandat 2540.386 kb on - strand, within Shewana3_2116at 2541.020 kb on + strand, within Shewana3_2117at 2541.429 kb on + strand, within Shewana3_2117

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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2,538,748 - +2.4
2,539,154 + Shewana3_2115 0.47 +0.6
2,539,554 + +0.1
2,539,666 + +2.4
2,540,386 - Shewana3_2116 0.74 +0.9
2,541,020 + Shewana3_2117 0.32 -1.3
2,541,429 + Shewana3_2117 0.75 +1.9

Or see this region's nucleotide sequence