Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2055

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2054 and Shewana3_2055 are separated by 18 nucleotidesShewana3_2055 and Shewana3_2056 are separated by 67 nucleotidesShewana3_2056 and Shewana3_2057 overlap by 7 nucleotidesShewana3_2057 and Shewana3_2058 overlap by 1 nucleotides Shewana3_2054: Shewana3_2054 - seryl-tRNA synthetase (RefSeq), at 2,463,087 to 2,464,373 _2054 Shewana3_2055: Shewana3_2055 - hypothetical protein (RefSeq), at 2,464,392 to 2,464,514 _2055 Shewana3_2056: Shewana3_2056 - formate dehydrogenase (RefSeq), at 2,464,582 to 2,464,920 _2056 Shewana3_2057: Shewana3_2057 - DsrH family protein (RefSeq), at 2,464,914 to 2,465,195 _2057 Shewana3_2058: Shewana3_2058 - DsrE family protein (RefSeq), at 2,465,195 to 2,465,551 _2058 Position (kb) 2464 2465Strain fitness (log2 ratio) -1 0 1 2 3at 2464.382 kb on + strandat 2464.407 kb on + strand, within Shewana3_2055at 2464.475 kb on + strand, within Shewana3_2055at 2464.554 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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2,464,382 + +3.3
2,464,407 + Shewana3_2055 0.12 +1.3
2,464,475 + Shewana3_2055 0.67 +0.7
2,464,554 - +2.4

Or see this region's nucleotide sequence