Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1809

Experiment: Spectinomycin 0.025 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.025 mg/ml
2,133,759	+				+0.7
2,133,774	+				+0.8
2,133,774	+				-2.5
2,133,782	-				+0.1
2,133,916	-				+1.8
2,133,998	+				+1.4
2,134,048	+				+0.7
2,134,126	+		Shewana3_1808	0.20	-0.8
2,134,139	-		Shewana3_1808	0.22	+1.4
2,134,140	-		Shewana3_1808	0.22	+1.4
2,134,176	+		Shewana3_1808	0.28	+0.2
2,134,241	+		Shewana3_1808	0.37	+1.2
2,134,300	+		Shewana3_1808	0.45	-0.3
2,134,308	-		Shewana3_1808	0.46	+1.4
2,134,313	+		Shewana3_1808	0.47	+1.4
2,134,370	+		Shewana3_1808	0.55	+0.1
2,134,375	+		Shewana3_1808	0.56	+3.0
2,134,476	+		Shewana3_1808	0.70	-0.9
2,134,620	+				+1.4
2,134,756	-				-1.3
2,134,791	-				+2.4
2,134,793	+				+0.2
2,134,801	-				+2.4
2,134,863	-		Shewana3_1809	0.16	+1.4
2,134,896	+		Shewana3_1809	0.19	+0.4
2,134,896	+		Shewana3_1809	0.19	+0.1
2,135,060	+		Shewana3_1809	0.36	-0.8
2,135,060	+		Shewana3_1809	0.36	+1.1
2,135,192	+		Shewana3_1809	0.50	+0.8
2,135,228	+		Shewana3_1809	0.53	-1.4
2,135,235	+		Shewana3_1809	0.54	+0.1
2,135,250	-		Shewana3_1809	0.56	+1.4
2,135,371	+		Shewana3_1809	0.68	+0.6
2,135,408	+		Shewana3_1809	0.72	+0.8
2,135,414	+		Shewana3_1809	0.73	+0.2
2,135,431	+		Shewana3_1809	0.74	+3.4
2,135,473	+		Shewana3_1809	0.79	+0.1
2,135,473	+				+2.4
2,135,473	+		Shewana3_1809	0.79	+0.8
2,135,473	+		Shewana3_1809	0.79	+0.1
2,135,481	-		Shewana3_1809	0.80	+1.4
2,135,481	-		Shewana3_1809	0.80	+0.8
2,135,481	-		Shewana3_1809	0.80	-1.3
2,135,481	-		Shewana3_1809	0.80	+0.1
2,135,575	+		Shewana3_1809	0.89	-1.3
2,135,671	-				+1.4
2,135,672	+				+0.8
2,135,834	+		Shewana3_1810	0.14	+2.4
2,135,834	+		Shewana3_1810	0.14	+2.4
2,135,842	-		Shewana3_1810	0.17	-0.2
2,135,842	-		Shewana3_1810	0.17	-0.1
2,135,842	-		Shewana3_1810	0.17	-1.3
2,135,842	-		Shewana3_1810	0.17	+0.4
2,135,842	-		Shewana3_1810	0.17	-0.8
2,135,847	-		Shewana3_1810	0.19	+1.4
2,135,901	+		Shewana3_1810	0.40	+0.8
2,135,959	-		Shewana3_1810	0.63	+2.4
2,135,976	+		Shewana3_1810	0.69	+3.7
2,135,981	+		Shewana3_1810	0.71	+1.1
2,135,982	-		Shewana3_1810	0.72	-0.2
2,135,984	-		Shewana3_1810	0.72	+0.2
2,135,997	+		Shewana3_1810	0.78	+2.4
2,136,314	+				+1.9
2,136,314	+				+1.4
2,136,319	+				+0.4
2,136,327	-				+2.4
2,136,366	+				+0.3
2,136,400	-				+0.1
2,136,413	-				-0.6
2,136,441	+				-0.8
2,136,448	-				+2.4
2,136,570	+				+1.4
2,136,576	+				-1.4