Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1691

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1690 and Shewana3_1691 are separated by 84 nucleotidesShewana3_1691 and Shewana3_1692 are separated by 212 nucleotides Shewana3_1690: Shewana3_1690 - protease domain-containing protein (RefSeq), at 1,985,098 to 1,989,000 _1690 Shewana3_1691: Shewana3_1691 - LysR family transcriptional regulator (RefSeq), at 1,989,085 to 1,989,966 _1691 Shewana3_1692: Shewana3_1692 - Xaa-His dipeptidase (RefSeq), at 1,990,179 to 1,991,489 _1692 Position (kb) 1989 1990Strain fitness (log2 ratio) -1 0 1 2at 1988.086 kb on + strand, within Shewana3_1690at 1988.135 kb on - strand, within Shewana3_1690at 1988.301 kb on - strand, within Shewana3_1690at 1988.396 kb on - strand, within Shewana3_1690at 1988.409 kb on + strand, within Shewana3_1690at 1988.506 kb on + strand, within Shewana3_1690at 1988.516 kb on + strand, within Shewana3_1690at 1988.938 kb on + strandat 1989.439 kb on + strand, within Shewana3_1691at 1989.712 kb on - strand, within Shewana3_1691at 1989.876 kb on - strand, within Shewana3_1691at 1989.895 kb on - strandat 1989.895 kb on - strandat 1989.987 kb on + strandat 1990.047 kb on + strandat 1990.047 kb on + strandat 1990.068 kb on + strandat 1990.073 kb on + strandat 1990.081 kb on - strandat 1990.191 kb on + strandat 1990.199 kb on - strandat 1990.322 kb on + strand, within Shewana3_1692at 1990.335 kb on - strand, within Shewana3_1692at 1990.479 kb on - strand, within Shewana3_1692at 1990.637 kb on + strand, within Shewana3_1692at 1990.938 kb on + strand, within Shewana3_1692

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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1,988,086 + Shewana3_1690 0.77 +1.3
1,988,135 - Shewana3_1690 0.78 -0.4
1,988,301 - Shewana3_1690 0.82 +0.4
1,988,396 - Shewana3_1690 0.84 -1.0
1,988,409 + Shewana3_1690 0.85 +0.8
1,988,506 + Shewana3_1690 0.87 +0.3
1,988,516 + Shewana3_1690 0.88 -0.3
1,988,938 + +0.7
1,989,439 + Shewana3_1691 0.40 -0.3
1,989,712 - Shewana3_1691 0.71 -1.0
1,989,876 - Shewana3_1691 0.90 +1.3
1,989,895 - -0.0
1,989,895 - +0.7
1,989,987 + +2.3
1,990,047 + -0.5
1,990,047 + +2.3
1,990,068 + -1.2
1,990,073 + -0.4
1,990,081 - -0.0
1,990,191 + +2.3
1,990,199 - +0.7
1,990,322 + Shewana3_1692 0.11 +0.4
1,990,335 - Shewana3_1692 0.12 -1.2
1,990,479 - Shewana3_1692 0.23 -0.3
1,990,637 + Shewana3_1692 0.35 -0.2
1,990,938 + Shewana3_1692 0.58 -0.0

Or see this region's nucleotide sequence