Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1665

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1663 and Shewana3_1664 are separated by 35 nucleotidesShewana3_1664 and Shewana3_1665 are separated by 107 nucleotidesShewana3_1665 and Shewana3_1666 are separated by 405 nucleotides Shewana3_1663: Shewana3_1663 - hypothetical protein (RefSeq), at 1,955,055 to 1,955,366 _1663 Shewana3_1664: Shewana3_1664 - ThiJ/PfpI domain-containing protein (RefSeq), at 1,955,402 to 1,956,004 _1664 Shewana3_1665: Shewana3_1665 - hypothetical protein (RefSeq), at 1,956,112 to 1,957,143 _1665 Shewana3_1666: Shewana3_1666 - butyryl-CoA:acetate CoA transferase (RefSeq), at 1,957,549 to 1,958,205 _1666 Position (kb) 1956 1957 1958Strain fitness (log2 ratio) -1 0 1 2at 1955.207 kb on - strand, within Shewana3_1663at 1955.869 kb on + strand, within Shewana3_1664at 1956.027 kb on + strandat 1956.319 kb on - strand, within Shewana3_1665at 1956.342 kb on - strand, within Shewana3_1665at 1956.342 kb on - strand, within Shewana3_1665at 1957.092 kb on + strandat 1957.092 kb on + strandat 1957.247 kb on + strandat 1957.252 kb on + strandat 1957.252 kb on + strandat 1957.354 kb on + strandat 1957.364 kb on - strandat 1957.380 kb on + strandat 1957.387 kb on + strandat 1957.716 kb on - strand, within Shewana3_1666

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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1,955,207 - Shewana3_1663 0.49 +0.9
1,955,869 + Shewana3_1664 0.77 -0.6
1,956,027 + +2.3
1,956,319 - Shewana3_1665 0.20 +2.2
1,956,342 - Shewana3_1665 0.22 -0.6
1,956,342 - Shewana3_1665 0.22 -1.0
1,957,092 + +2.0
1,957,092 + +0.5
1,957,247 + -1.2
1,957,252 + -0.3
1,957,252 + +0.2
1,957,354 + +0.9
1,957,364 - -0.7
1,957,380 + -0.5
1,957,387 + +0.7
1,957,716 - Shewana3_1666 0.25 +1.6

Or see this region's nucleotide sequence