Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1639 and Shewana3_1640 are separated by 226 nucleotides Shewana3_1640 and Shewana3_1641 are separated by 129 nucleotides
Shewana3_1639: Shewana3_1639 - manganese and iron superoxide dismutase (RefSeq), at 1,930,754 to 1,931,338
_1639
Shewana3_1640: Shewana3_1640 - glutaredoxin-like protein (RefSeq), at 1,931,565 to 1,931,897
_1640
Shewana3_1641: Shewana3_1641 - uracil-xanthine permease (RefSeq), at 1,932,027 to 1,933,265
_1641
Position (kb)
1931
1932 Strain fitness (log2 ratio)
-1
0
1
2 at 1930.759 kb on - strand at 1930.759 kb on - strand at 1931.392 kb on + strand at 1931.480 kb on - strand at 1931.504 kb on - strand at 1931.506 kb on + strand at 1931.621 kb on + strand, within Shewana3_1640 at 1931.621 kb on + strand, within Shewana3_1640 at 1931.801 kb on + strand, within Shewana3_1640 at 1931.887 kb on - strand at 1932.015 kb on + strand at 1932.023 kb on - strand at 1932.025 kb on + strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.033 kb on - strand at 1932.103 kb on - strand at 1932.304 kb on + strand, within Shewana3_1641 at 1932.321 kb on + strand, within Shewana3_1641 at 1932.344 kb on - strand, within Shewana3_1641 at 1932.393 kb on + strand, within Shewana3_1641 at 1932.452 kb on - strand, within Shewana3_1641 at 1932.861 kb on - strand, within Shewana3_1641 at 1932.861 kb on - strand, within Shewana3_1641
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 1,930,759 - +2.3 1,930,759 - +2.0 1,931,392 + +1.8 1,931,480 - +0.3 1,931,504 - -0.1 1,931,506 + -0.4 1,931,621 + Shewana3_1640 0.17 -1.3 1,931,621 + Shewana3_1640 0.17 -0.9 1,931,801 + Shewana3_1640 0.71 -1.0 1,931,887 - +0.2 1,932,015 + +0.6 1,932,023 - -0.1 1,932,025 + -1.2 1,932,033 - +0.7 1,932,033 - -0.2 1,932,033 - +1.0 1,932,033 - +0.6 1,932,033 - +0.6 1,932,103 - +0.5 1,932,304 + Shewana3_1641 0.22 -1.7 1,932,321 + Shewana3_1641 0.24 +1.3 1,932,344 - Shewana3_1641 0.26 -0.1 1,932,393 + Shewana3_1641 0.30 +0.2 1,932,452 - Shewana3_1641 0.34 +0.3 1,932,861 - Shewana3_1641 0.67 -1.1 1,932,861 - Shewana3_1641 0.67 +0.3
Or see this region's nucleotide sequence