Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1543
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,799,890 | + | -1.4 | |||
1,799,949 | + | -1.2 | |||
1,800,079 | + | Shewana3_1542 | 0.24 | -0.6 | |
1,800,124 | - | Shewana3_1542 | 0.29 | -1.7 | |
1,800,271 | - | Shewana3_1542 | 0.46 | -0.8 | |
1,800,526 | + | Shewana3_1542 | 0.75 | -1.1 | |
1,800,526 | + | Shewana3_1542 | 0.75 | -0.6 | |
1,800,607 | - | Shewana3_1542 | 0.84 | -0.9 | |
1,800,871 | + | folX | Shewana3_1543 | 0.12 | +0.2 |
1,801,395 | + | +0.4 | |||
1,801,487 | - | Shewana3_1544 | 0.18 | +2.2 | |
1,801,690 | + | Shewana3_1544 | 0.36 | +0.3 | |
1,801,693 | - | Shewana3_1544 | 0.36 | +0.7 | |
1,801,890 | - | Shewana3_1544 | 0.54 | +2.2 | |
1,801,910 | + | Shewana3_1544 | 0.56 | +0.5 | |
1,801,968 | - | Shewana3_1544 | 0.61 | -0.6 | |
1,802,094 | - | Shewana3_1544 | 0.73 | +0.2 |
Or see this region's nucleotide sequence