Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1538
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,793,289 | - | Shewana3_1537 | 0.25 | -0.1 | |
1,793,635 | + | Shewana3_1537 | 0.83 | -0.5 | |
1,793,698 | - | -0.1 | |||
1,793,931 | + | Shewana3_1538 | 0.19 | -0.3 | |
1,793,964 | - | Shewana3_1538 | 0.23 | -0.1 | |
1,794,130 | - | Shewana3_1538 | 0.45 | -0.5 | |
1,794,190 | - | Shewana3_1538 | 0.53 | -0.8 | |
1,794,197 | + | Shewana3_1538 | 0.54 | -0.6 | |
1,794,205 | - | Shewana3_1538 | 0.55 | -0.8 | |
1,794,230 | + | Shewana3_1538 | 0.59 | -1.2 | |
1,794,338 | - | Shewana3_1538 | 0.73 | +1.2 | |
1,794,405 | + | Shewana3_1538 | 0.82 | +0.2 | |
1,794,478 | + | -0.6 | |||
1,794,629 | - | +0.5 | |||
1,794,653 | - | +0.4 | |||
1,794,923 | + | Shewana3_1539 | 0.15 | -0.0 | |
1,794,935 | + | Shewana3_1539 | 0.16 | +0.6 | |
1,794,988 | + | Shewana3_1539 | 0.18 | -0.2 | |
1,795,320 | + | Shewana3_1539 | 0.31 | +0.7 | |
1,795,320 | + | Shewana3_1539 | 0.31 | +0.2 | |
1,795,320 | + | Shewana3_1539 | 0.31 | +1.4 | |
1,795,360 | + | Shewana3_1539 | 0.33 | -0.6 | |
1,795,405 | - | Shewana3_1539 | 0.34 | +0.4 |
Or see this region's nucleotide sequence