Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1462
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,695,958 | - | fadJ | Shewana3_1461 | 0.67 | +1.0 |
1,695,978 | + | fadJ | Shewana3_1461 | 0.68 | -0.5 |
1,696,084 | + | fadJ | Shewana3_1461 | 0.73 | +0.3 |
1,696,351 | + | fadJ | Shewana3_1461 | 0.85 | -0.9 |
1,696,351 | + | fadJ | Shewana3_1461 | 0.85 | -0.2 |
1,696,409 | - | fadJ | Shewana3_1461 | 0.88 | -2.8 |
1,696,512 | + | -0.4 | |||
1,696,518 | + | +0.1 | |||
1,696,604 | + | +0.3 | |||
1,696,612 | - | +1.0 | |||
1,696,824 | - | -0.1 | |||
1,696,835 | - | -0.7 | |||
1,697,119 | - | -0.3 | |||
1,697,120 | + | +0.4 | |||
1,697,137 | - | +2.0 | |||
1,697,222 | + | -0.3 | |||
1,697,222 | + | +1.0 | |||
1,697,230 | - | -0.8 | |||
1,697,230 | - | +1.2 | |||
1,697,230 | - | +0.3 | |||
1,697,272 | + | +2.0 | |||
1,697,280 | - | +2.3 | |||
1,697,304 | + | -0.2 | |||
1,697,311 | - | +0.9 | |||
1,697,312 | - | +1.0 | |||
1,697,312 | - | +0.6 | |||
1,697,846 | - | Shewana3_1463 | 0.74 | +1.2 | |
1,697,893 | - | Shewana3_1463 | 0.82 | -0.3 | |
1,698,004 | - | +0.0 |
Or see this region's nucleotide sequence