Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1438
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
|---|---|---|---|---|---|
| remove | |||||
| 1,666,678 | - | secD | Shewana3_1437 | 0.48 | +2.0 |
| 1,667,301 | + | secD | Shewana3_1437 | 0.81 | -1.4 |
| 1,667,301 | + | secD | Shewana3_1437 | 0.81 | -1.2 |
| 1,667,704 | + | -0.6 | |||
| 1,667,877 | + | secF | Shewana3_1438 | 0.23 | -2.4 |
| 1,667,959 | + | secF | Shewana3_1438 | 0.31 | -0.5 |
| 1,668,257 | + | secF | Shewana3_1438 | 0.63 | -0.7 |
| 1,668,828 | - | -2.1 | |||
| 1,669,109 | + | Shewana3_1439 | 0.77 | +0.2 | |
| 1,669,332 | - | +0.2 | |||
| 1,669,463 | - | -0.2 | |||
| 1,669,489 | - | Shewana3_1440 | 0.10 | +0.0 |
Or see this region's nucleotide sequence