Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0980

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0979 and Shewana3_0980 are separated by 104 nucleotidesShewana3_0980 and Shewana3_0981 are separated by 44 nucleotides Shewana3_0979: Shewana3_0979 - hypothetical protein (RefSeq), at 1,149,941 to 1,150,867 _0979 Shewana3_0980: Shewana3_0980 - 3'-5' exonuclease (RefSeq), at 1,150,972 to 1,151,883 _0980 Shewana3_0981: Shewana3_0981 - hypothetical protein (RefSeq), at 1,151,928 to 1,152,896 _0981 Position (kb) 1150 1151 1152Strain fitness (log2 ratio) -2 -1 0 1at 1150.410 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979at 1150.549 kb on + strand, within Shewana3_0979at 1150.763 kb on + strand, within Shewana3_0979at 1150.848 kb on + strandat 1150.864 kb on - strandat 1151.215 kb on - strand, within Shewana3_0980at 1151.366 kb on + strand, within Shewana3_0980at 1151.374 kb on - strand, within Shewana3_0980at 1151.374 kb on - strand, within Shewana3_0980at 1151.477 kb on - strand, within Shewana3_0980at 1151.539 kb on - strand, within Shewana3_0980at 1151.841 kb on + strandat 1151.884 kb on + strandat 1152.081 kb on + strand, within Shewana3_0981at 1152.264 kb on + strand, within Shewana3_0981at 1152.344 kb on - strand, within Shewana3_0981at 1152.407 kb on - strand, within Shewana3_0981at 1152.638 kb on - strand, within Shewana3_0981at 1152.762 kb on + strand, within Shewana3_0981

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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1,150,410 + Shewana3_0979 0.51 +0.2
1,150,549 + Shewana3_0979 0.66 -0.5
1,150,549 + Shewana3_0979 0.66 +0.6
1,150,763 + Shewana3_0979 0.89 -0.0
1,150,848 + +0.1
1,150,864 - -1.3
1,151,215 - Shewana3_0980 0.27 -2.3
1,151,366 + Shewana3_0980 0.43 -0.8
1,151,374 - Shewana3_0980 0.44 +0.2
1,151,374 - Shewana3_0980 0.44 -0.7
1,151,477 - Shewana3_0980 0.55 +0.2
1,151,539 - Shewana3_0980 0.62 -1.7
1,151,841 + -0.5
1,151,884 + +0.3
1,152,081 + Shewana3_0981 0.16 -0.7
1,152,264 + Shewana3_0981 0.35 +0.6
1,152,344 - Shewana3_0981 0.43 -0.5
1,152,407 - Shewana3_0981 0.49 +0.2
1,152,638 - Shewana3_0981 0.73 -0.3
1,152,762 + Shewana3_0981 0.86 -0.4

Or see this region's nucleotide sequence