Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0980
Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.025 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,150,410 | + | Shewana3_0979 | 0.51 | +0.2 | |
1,150,549 | + | Shewana3_0979 | 0.66 | -0.5 | |
1,150,549 | + | Shewana3_0979 | 0.66 | +0.6 | |
1,150,763 | + | Shewana3_0979 | 0.89 | -0.0 | |
1,150,848 | + | +0.1 | |||
1,150,864 | - | -1.3 | |||
1,151,215 | - | Shewana3_0980 | 0.27 | -2.3 | |
1,151,366 | + | Shewana3_0980 | 0.43 | -0.8 | |
1,151,374 | - | Shewana3_0980 | 0.44 | +0.2 | |
1,151,374 | - | Shewana3_0980 | 0.44 | -0.7 | |
1,151,477 | - | Shewana3_0980 | 0.55 | +0.2 | |
1,151,539 | - | Shewana3_0980 | 0.62 | -1.7 | |
1,151,841 | + | -0.5 | |||
1,151,884 | + | +0.3 | |||
1,152,081 | + | Shewana3_0981 | 0.16 | -0.7 | |
1,152,264 | + | Shewana3_0981 | 0.35 | +0.6 | |
1,152,344 | - | Shewana3_0981 | 0.43 | -0.5 | |
1,152,407 | - | Shewana3_0981 | 0.49 | +0.2 | |
1,152,638 | - | Shewana3_0981 | 0.73 | -0.3 | |
1,152,762 | + | Shewana3_0981 | 0.86 | -0.4 |
Or see this region's nucleotide sequence