Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0848 and Shewana3_0849 are separated by 177 nucleotides Shewana3_0849 and Shewana3_0850 overlap by 4 nucleotides Shewana3_0850 and Shewana3_0851 are separated by 153 nucleotides
Shewana3_0848: Shewana3_0848 - lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase (RefSeq), at 985,378 to 986,229
_0848
Shewana3_0849: Shewana3_0849 - bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (RefSeq), at 986,407 to 987,837
_0849
Shewana3_0850: Shewana3_0850 - hypothetical protein (RefSeq), at 987,834 to 988,661
_0850
Shewana3_0851: Shewana3_0851 - TetR family transcriptional regulator (RefSeq), at 988,815 to 989,294
_0851
Position (kb)
986
987
988 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 986.400 kb on - strand at 986.450 kb on - strand at 986.531 kb on + strand at 986.550 kb on - strand, within Shewana3_0849 at 986.550 kb on - strand, within Shewana3_0849 at 986.617 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.717 kb on + strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.725 kb on - strand, within Shewana3_0849 at 986.785 kb on + strand, within Shewana3_0849 at 986.829 kb on - strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.840 kb on + strand, within Shewana3_0849 at 986.848 kb on - strand, within Shewana3_0849 at 986.969 kb on + strand, within Shewana3_0849 at 987.026 kb on + strand, within Shewana3_0849 at 987.086 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.096 kb on - strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.112 kb on + strand, within Shewana3_0849 at 987.118 kb on + strand, within Shewana3_0849 at 987.119 kb on + strand, within Shewana3_0849 at 987.136 kb on + strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.172 kb on - strand, within Shewana3_0849 at 987.283 kb on + strand, within Shewana3_0849 at 987.338 kb on + strand, within Shewana3_0849 at 987.346 kb on - strand, within Shewana3_0849 at 987.409 kb on - strand, within Shewana3_0849 at 987.472 kb on + strand, within Shewana3_0849 at 987.510 kb on - strand, within Shewana3_0849 at 987.774 kb on - strand at 987.859 kb on + strand at 988.012 kb on + strand, within Shewana3_0850 at 988.019 kb on + strand, within Shewana3_0850 at 988.027 kb on - strand, within Shewana3_0850 at 988.768 kb on + strand at 988.786 kb on - strand at 988.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 986,400 - +0.4 986,450 - -1.4 986,531 + +1.6 986,550 - Shewana3_0849 0.10 -0.5 986,550 - Shewana3_0849 0.10 -1.1 986,617 + Shewana3_0849 0.15 +2.0 986,717 + Shewana3_0849 0.22 +1.4 986,717 + Shewana3_0849 0.22 -0.3 986,725 - Shewana3_0849 0.22 +0.4 986,725 - Shewana3_0849 0.22 +0.4 986,785 + Shewana3_0849 0.26 +1.5 986,829 - Shewana3_0849 0.29 +1.3 986,840 + Shewana3_0849 0.30 +0.9 986,840 + Shewana3_0849 0.30 +1.5 986,848 - Shewana3_0849 0.31 -0.7 986,969 + Shewana3_0849 0.39 +1.6 987,026 + Shewana3_0849 0.43 +1.3 987,086 - Shewana3_0849 0.47 -0.7 987,096 - Shewana3_0849 0.48 +0.4 987,096 - Shewana3_0849 0.48 +1.9 987,112 + Shewana3_0849 0.49 +1.5 987,112 + Shewana3_0849 0.49 +2.0 987,118 + Shewana3_0849 0.50 +1.8 987,119 + Shewana3_0849 0.50 +1.0 987,136 + Shewana3_0849 0.51 +1.1 987,172 - Shewana3_0849 0.53 +1.6 987,172 - Shewana3_0849 0.53 +0.9 987,283 + Shewana3_0849 0.61 +2.3 987,338 + Shewana3_0849 0.65 +0.1 987,346 - Shewana3_0849 0.66 -1.7 987,409 - Shewana3_0849 0.70 -1.5 987,472 + Shewana3_0849 0.74 +2.2 987,510 - Shewana3_0849 0.77 -1.8 987,774 - +1.5 987,859 + +0.7 988,012 + Shewana3_0850 0.21 +1.1 988,019 + Shewana3_0850 0.22 -0.0 988,027 - Shewana3_0850 0.23 -0.0 988,768 + +0.9 988,786 - -1.0 988,832 + -0.0
Or see this region's nucleotide sequence