Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0777

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0776 and Shewana3_0777 are separated by 174 nucleotidesShewana3_0777 and Shewana3_0778 are separated by 54 nucleotides Shewana3_0776: Shewana3_0776 - hypothetical protein (RefSeq), at 897,893 to 898,765 _0776 Shewana3_0777: Shewana3_0777 - EAL domain-containing protein (RefSeq), at 898,940 to 900,499 _0777 Shewana3_0778: Shewana3_0778 - ammonium transporter (RefSeq), at 900,554 to 901,954 _0778 Position (kb) 898 899 900 901Strain fitness (log2 ratio) -2 -1 0 1at 897.991 kb on - strand, within Shewana3_0776at 898.059 kb on + strand, within Shewana3_0776at 898.185 kb on + strand, within Shewana3_0776at 898.317 kb on + strand, within Shewana3_0776at 898.317 kb on + strand, within Shewana3_0776at 898.338 kb on + strand, within Shewana3_0776at 898.394 kb on - strand, within Shewana3_0776at 898.475 kb on + strand, within Shewana3_0776at 898.476 kb on + strand, within Shewana3_0776at 898.476 kb on + strand, within Shewana3_0776at 898.507 kb on + strand, within Shewana3_0776at 898.552 kb on - strand, within Shewana3_0776at 898.629 kb on - strand, within Shewana3_0776at 898.666 kb on + strand, within Shewana3_0776at 899.147 kb on - strand, within Shewana3_0777at 899.509 kb on - strand, within Shewana3_0777at 899.813 kb on + strand, within Shewana3_0777at 899.821 kb on - strand, within Shewana3_0777at 899.836 kb on + strand, within Shewana3_0777at 899.836 kb on + strand, within Shewana3_0777at 899.844 kb on - strand, within Shewana3_0777at 899.844 kb on - strand, within Shewana3_0777at 899.882 kb on + strand, within Shewana3_0777at 899.939 kb on + strand, within Shewana3_0777at 900.205 kb on + strand, within Shewana3_0777at 900.213 kb on - strand, within Shewana3_0777at 900.236 kb on + strand, within Shewana3_0777at 900.253 kb on + strand, within Shewana3_0777at 900.317 kb on - strand, within Shewana3_0777at 900.330 kb on + strand, within Shewana3_0777at 900.480 kb on + strandat 900.499 kb on + strandat 900.551 kb on + strandat 900.560 kb on + strandat 900.703 kb on + strand, within Shewana3_0778at 900.742 kb on + strand, within Shewana3_0778at 900.954 kb on + strand, within Shewana3_0778at 900.986 kb on - strand, within Shewana3_0778at 900.993 kb on - strand, within Shewana3_0778at 901.228 kb on - strand, within Shewana3_0778at 901.291 kb on + strand, within Shewana3_0778at 901.294 kb on - strand, within Shewana3_0778at 901.495 kb on - strand, within Shewana3_0778

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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897,991 - Shewana3_0776 0.11 -0.4
898,059 + Shewana3_0776 0.19 -1.7
898,185 + Shewana3_0776 0.33 +0.2
898,317 + Shewana3_0776 0.49 -0.4
898,317 + Shewana3_0776 0.49 -0.2
898,338 + Shewana3_0776 0.51 -0.8
898,394 - Shewana3_0776 0.57 -1.0
898,475 + Shewana3_0776 0.67 -0.6
898,476 + Shewana3_0776 0.67 -0.3
898,476 + Shewana3_0776 0.67 +0.7
898,507 + Shewana3_0776 0.70 -0.1
898,552 - Shewana3_0776 0.75 -1.4
898,629 - Shewana3_0776 0.84 -1.2
898,666 + Shewana3_0776 0.89 -1.8
899,147 - Shewana3_0777 0.13 -2.6
899,509 - Shewana3_0777 0.36 -1.2
899,813 + Shewana3_0777 0.56 -0.2
899,821 - Shewana3_0777 0.56 -0.5
899,836 + Shewana3_0777 0.57 -0.3
899,836 + Shewana3_0777 0.57 -0.5
899,844 - Shewana3_0777 0.58 -1.6
899,844 - Shewana3_0777 0.58 +0.1
899,882 + Shewana3_0777 0.60 -0.4
899,939 + Shewana3_0777 0.64 -0.3
900,205 + Shewana3_0777 0.81 -0.1
900,213 - Shewana3_0777 0.82 +0.7
900,236 + Shewana3_0777 0.83 +0.1
900,253 + Shewana3_0777 0.84 -0.1
900,317 - Shewana3_0777 0.88 -0.4
900,330 + Shewana3_0777 0.89 -0.3
900,480 + +0.9
900,499 + +1.3
900,551 + +0.6
900,560 + -0.0
900,703 + Shewana3_0778 0.11 +0.3
900,742 + Shewana3_0778 0.13 +0.3
900,954 + Shewana3_0778 0.29 -0.5
900,986 - Shewana3_0778 0.31 +0.6
900,993 - Shewana3_0778 0.31 +0.3
901,228 - Shewana3_0778 0.48 +0.2
901,291 + Shewana3_0778 0.53 -2.7
901,294 - Shewana3_0778 0.53 -0.1
901,495 - Shewana3_0778 0.67 -0.5

Or see this region's nucleotide sequence