Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0735 and Shewana3_0736 are separated by 142 nucleotides Shewana3_0736 and Shewana3_0737 are separated by 168 nucleotides Shewana3_0737 and Shewana3_0738 are separated by 120 nucleotides
Shewana3_0735: Shewana3_0735 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 854,196 to 855,029
_0735
Shewana3_0736: Shewana3_0736 - ATPase domain-containing protein (RefSeq), at 855,172 to 856,803
_0736
Shewana3_0737: Shewana3_0737 - hypothetical protein (RefSeq), at 856,972 to 857,583
_0737
Shewana3_0738: Shewana3_0738 - hypothetical protein (RefSeq), at 857,704 to 857,835
_0738
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 854.198 kb on - strand at 854.245 kb on + strand at 854.245 kb on + strand at 854.542 kb on + strand, within Shewana3_0735 at 854.581 kb on + strand, within Shewana3_0735 at 854.675 kb on - strand, within Shewana3_0735 at 854.855 kb on - strand, within Shewana3_0735 at 855.105 kb on + strand at 855.220 kb on + strand at 855.295 kb on - strand at 855.325 kb on + strand at 855.325 kb on + strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.333 kb on - strand at 855.484 kb on + strand, within Shewana3_0736 at 855.493 kb on + strand, within Shewana3_0736 at 855.561 kb on - strand, within Shewana3_0736 at 855.580 kb on - strand, within Shewana3_0736 at 855.677 kb on - strand, within Shewana3_0736 at 855.735 kb on - strand, within Shewana3_0736 at 855.973 kb on + strand, within Shewana3_0736 at 855.991 kb on - strand, within Shewana3_0736 at 856.289 kb on - strand, within Shewana3_0736 at 856.412 kb on - strand, within Shewana3_0736 at 856.710 kb on + strand at 856.727 kb on + strand at 856.962 kb on + strand at 857.079 kb on + strand, within Shewana3_0737 at 857.141 kb on + strand, within Shewana3_0737 at 857.184 kb on + strand, within Shewana3_0737 at 857.557 kb on + strand at 857.564 kb on + strand at 857.565 kb on - strand at 857.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 854,198 - +0.5 854,245 + +0.9 854,245 + +0.3 854,542 + Shewana3_0735 0.41 -0.1 854,581 + Shewana3_0735 0.46 +1.4 854,675 - Shewana3_0735 0.57 +0.0 854,855 - Shewana3_0735 0.79 +0.7 855,105 + -1.0 855,220 + -0.6 855,295 - +0.6 855,325 + +0.8 855,325 + +0.4 855,333 - -0.1 855,333 - +0.6 855,333 - -1.6 855,333 - -0.5 855,333 - +1.2 855,333 - -0.8 855,484 + Shewana3_0736 0.19 -2.2 855,493 + Shewana3_0736 0.20 -0.3 855,561 - Shewana3_0736 0.24 -1.7 855,580 - Shewana3_0736 0.25 -1.5 855,677 - Shewana3_0736 0.31 -2.8 855,735 - Shewana3_0736 0.34 -0.5 855,973 + Shewana3_0736 0.49 -0.1 855,991 - Shewana3_0736 0.50 -1.9 856,289 - Shewana3_0736 0.68 -0.8 856,412 - Shewana3_0736 0.76 -0.1 856,710 + +0.5 856,727 + +0.9 856,962 + +0.3 857,079 + Shewana3_0737 0.17 -0.2 857,141 + Shewana3_0737 0.28 +0.5 857,184 + Shewana3_0737 0.35 +0.5 857,557 + +0.1 857,564 + +0.5 857,565 - -0.8 857,572 - +0.9
Or see this region's nucleotide sequence