Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0732

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0731 and Shewana3_0732 overlap by 8 nucleotidesShewana3_0732 and Shewana3_0733 are separated by 171 nucleotides Shewana3_0731: Shewana3_0731 - L-sorbosone dehydrogenase, putative (RefSeq), at 847,589 to 848,764 _0731 Shewana3_0732: Shewana3_0732 - DNA topoisomerase IV subunit A (RefSeq), at 848,757 to 851,033 _0732 Shewana3_0733: Shewana3_0733 - porin (RefSeq), at 851,205 to 852,284 _0733 Position (kb) 848 849 850 851 852Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 847.974 kb on + strand, within Shewana3_0731at 848.359 kb on + strand, within Shewana3_0731at 851.226 kb on - strandat 851.460 kb on + strandat 851.548 kb on + strand, within Shewana3_0733at 851.616 kb on - strand, within Shewana3_0733at 851.668 kb on - strand, within Shewana3_0733at 851.891 kb on + strand, within Shewana3_0733

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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847,974 + Shewana3_0731 0.33 -3.0
848,359 + Shewana3_0731 0.65 -0.4
851,226 - +0.7
851,460 + +1.8
851,548 + Shewana3_0733 0.32 -0.5
851,616 - Shewana3_0733 0.38 +2.2
851,668 - Shewana3_0733 0.43 +0.6
851,891 + Shewana3_0733 0.64 -1.9

Or see this region's nucleotide sequence