Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0687 and Shewana3_0688 are separated by 33 nucleotides Shewana3_0688 and Shewana3_0689 are separated by 165 nucleotides Shewana3_0689 and Shewana3_0690 are separated by 125 nucleotides
Shewana3_0687: Shewana3_0687 - hypothetical protein (RefSeq), at 803,698 to 804,102
_0687
Shewana3_0688: Shewana3_0688 - hypothetical protein (RefSeq), at 804,136 to 804,576
_0688
Shewana3_0689: Shewana3_0689 - DegS serine peptidase (RefSeq), at 804,742 to 805,824
_0689
Shewana3_0690: Shewana3_0690 - peptidase Do (RefSeq), at 805,950 to 807,302
_0690
Position (kb) 804
805
806 Strain fitness (log2 ratio) -2
-1
0
1
2 at 803.871 kb on - strand, within Shewana3_0687 at 803.907 kb on + strand, within Shewana3_0687 at 803.957 kb on + strand, within Shewana3_0687 at 803.965 kb on - strand, within Shewana3_0687 at 804.105 kb on - strand at 804.178 kb on + strand at 804.325 kb on - strand, within Shewana3_0688 at 804.358 kb on + strand, within Shewana3_0688 at 804.366 kb on - strand, within Shewana3_0688 at 804.505 kb on + strand, within Shewana3_0688 at 804.694 kb on + strand at 804.702 kb on - strand at 804.721 kb on + strand at 804.792 kb on - strand at 804.995 kb on - strand, within Shewana3_0689 at 805.051 kb on + strand, within Shewana3_0689 at 805.085 kb on - strand, within Shewana3_0689 at 805.897 kb on + strand at 806.030 kb on - strand at 806.113 kb on + strand at 806.121 kb on - strand, within Shewana3_0690 at 806.521 kb on - strand, within Shewana3_0690 at 806.753 kb on + strand, within Shewana3_0690
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 803,871 - Shewana3_0687 0.43 -0.9 803,907 + Shewana3_0687 0.52 -0.2 803,957 + Shewana3_0687 0.64 -0.3 803,965 - Shewana3_0687 0.66 -2.5 804,105 - -1.2 804,178 + +0.4 804,325 - Shewana3_0688 0.43 -1.0 804,358 + Shewana3_0688 0.50 +0.4 804,366 - Shewana3_0688 0.52 +0.7 804,505 + Shewana3_0688 0.84 -0.8 804,694 + -0.9 804,702 - +0.5 804,721 + -1.3 804,792 - +2.0 804,995 - Shewana3_0689 0.23 +1.7 805,051 + Shewana3_0689 0.29 +0.8 805,085 - Shewana3_0689 0.32 +1.4 805,897 + -0.5 806,030 - +0.7 806,113 + +0.8 806,121 - Shewana3_0690 0.13 +1.0 806,521 - Shewana3_0690 0.42 -1.3 806,753 + Shewana3_0690 0.59 +0.2
Or see this region's nucleotide sequence