Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0635

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0634 and Shewana3_0635 overlap by 11 nucleotidesShewana3_0635 and Shewana3_0636 are separated by 254 nucleotides Shewana3_0634: Shewana3_0634 - polysulphide reductase, NrfD (RefSeq), at 747,044 to 748,138 _0634 Shewana3_0635: Shewana3_0635 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 748,128 to 748,883 _0635 Shewana3_0636: Shewana3_0636 - ATPase domain-containing protein (RefSeq), at 749,138 to 751,126 _0636 Position (kb) 748 749Strain fitness (log2 ratio) -2 -1 0 1at 747.330 kb on - strand, within Shewana3_0634at 747.428 kb on + strand, within Shewana3_0634at 747.448 kb on + strand, within Shewana3_0634at 747.456 kb on - strand, within Shewana3_0634at 747.456 kb on - strand, within Shewana3_0634at 747.494 kb on + strand, within Shewana3_0634at 747.815 kb on + strand, within Shewana3_0634at 747.922 kb on + strand, within Shewana3_0634at 748.052 kb on + strandat 748.052 kb on + strandat 748.055 kb on - strandat 748.081 kb on - strandat 748.083 kb on + strandat 748.083 kb on + strandat 748.258 kb on + strand, within Shewana3_0635at 748.485 kb on - strand, within Shewana3_0635at 748.595 kb on + strand, within Shewana3_0635at 748.595 kb on + strand, within Shewana3_0635at 748.603 kb on - strand, within Shewana3_0635at 748.710 kb on - strand, within Shewana3_0635at 748.722 kb on - strand, within Shewana3_0635at 748.797 kb on + strand, within Shewana3_0635at 748.860 kb on + strandat 748.944 kb on + strandat 748.987 kb on - strandat 749.020 kb on + strandat 749.125 kb on + strandat 749.133 kb on - strandat 749.149 kb on + strandat 749.149 kb on + strandat 749.250 kb on + strandat 749.297 kb on + strandat 749.405 kb on + strand, within Shewana3_0636at 749.427 kb on - strand, within Shewana3_0636at 749.454 kb on + strand, within Shewana3_0636at 749.454 kb on + strand, within Shewana3_0636at 749.462 kb on - strand, within Shewana3_0636at 749.503 kb on - strand, within Shewana3_0636at 749.545 kb on - strand, within Shewana3_0636at 749.554 kb on + strand, within Shewana3_0636at 749.599 kb on + strand, within Shewana3_0636at 749.607 kb on - strand, within Shewana3_0636at 749.655 kb on + strand, within Shewana3_0636at 749.676 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.695 kb on - strand, within Shewana3_0636at 749.719 kb on - strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.779 kb on + strand, within Shewana3_0636at 749.787 kb on - strand, within Shewana3_0636at 749.787 kb on - strand, within Shewana3_0636at 749.801 kb on + strand, within Shewana3_0636

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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747,330 - Shewana3_0634 0.26 -0.0
747,428 + Shewana3_0634 0.35 +0.2
747,448 + Shewana3_0634 0.37 -0.4
747,456 - Shewana3_0634 0.38 -0.4
747,456 - Shewana3_0634 0.38 +0.3
747,494 + Shewana3_0634 0.41 -0.6
747,815 + Shewana3_0634 0.70 -0.5
747,922 + Shewana3_0634 0.80 +1.1
748,052 + -0.9
748,052 + +0.0
748,055 - +0.3
748,081 - -0.3
748,083 + +0.3
748,083 + +0.2
748,258 + Shewana3_0635 0.17 +0.2
748,485 - Shewana3_0635 0.47 -0.1
748,595 + Shewana3_0635 0.62 -0.3
748,595 + Shewana3_0635 0.62 -1.4
748,603 - Shewana3_0635 0.63 -0.6
748,710 - Shewana3_0635 0.77 -0.7
748,722 - Shewana3_0635 0.79 -0.5
748,797 + Shewana3_0635 0.88 -0.7
748,860 + -0.8
748,944 + -0.9
748,987 - +1.2
749,020 + -2.1
749,125 + +0.4
749,133 - +0.5
749,149 + -1.5
749,149 + -0.1
749,250 + +0.1
749,297 + +0.7
749,405 + Shewana3_0636 0.13 -0.1
749,427 - Shewana3_0636 0.15 -0.9
749,454 + Shewana3_0636 0.16 -0.7
749,454 + Shewana3_0636 0.16 -0.4
749,462 - Shewana3_0636 0.16 +0.1
749,503 - Shewana3_0636 0.18 -0.5
749,545 - Shewana3_0636 0.20 -0.2
749,554 + Shewana3_0636 0.21 +0.4
749,599 + Shewana3_0636 0.23 -0.3
749,607 - Shewana3_0636 0.24 -2.3
749,655 + Shewana3_0636 0.26 -0.7
749,676 - Shewana3_0636 0.27 -0.7
749,695 - Shewana3_0636 0.28 +0.5
749,695 - Shewana3_0636 0.28 -1.3
749,695 - Shewana3_0636 0.28 -0.2
749,719 - Shewana3_0636 0.29 -0.5
749,779 + Shewana3_0636 0.32 -0.3
749,779 + Shewana3_0636 0.32 -0.1
749,779 + Shewana3_0636 0.32 -0.1
749,779 + Shewana3_0636 0.32 -0.3
749,779 + Shewana3_0636 0.32 +0.2
749,787 - Shewana3_0636 0.33 -0.5
749,787 - Shewana3_0636 0.33 -1.3
749,801 + Shewana3_0636 0.33 -1.0

Or see this region's nucleotide sequence