Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0628 and Shewana3_0629 are separated by 118 nucleotides Shewana3_0629 and Shewana3_0630 are separated by 68 nucleotides Shewana3_0630 and Shewana3_0631 are separated by 259 nucleotides
Shewana3_0628: Shewana3_0628 - hypothetical protein (RefSeq), at 737,995 to 738,405
_0628
Shewana3_0629: Shewana3_0629 - hypothetical protein (RefSeq), at 738,524 to 738,754
_0629
Shewana3_0630: Shewana3_0630 - no description, at 738,823 to 741,005
_0630
Shewana3_0631: Shewana3_0631 - hypothetical protein (RefSeq), at 741,265 to 741,966
_0631
Position (kb) 738
739
740
741
742 Strain fitness (log2 ratio) -2
-1
0
1
2 at 737.833 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.841 kb on - strand at 737.841 kb on - strand at 738.059 kb on + strand, within Shewana3_0628 at 738.249 kb on - strand, within Shewana3_0628 at 738.285 kb on + strand, within Shewana3_0628 at 738.327 kb on - strand, within Shewana3_0628 at 738.478 kb on + strand at 738.836 kb on + strand at 738.929 kb on + strand at 738.939 kb on + strand at 739.156 kb on - strand, within Shewana3_0630 at 739.214 kb on + strand, within Shewana3_0630 at 739.285 kb on + strand, within Shewana3_0630 at 739.759 kb on - strand, within Shewana3_0630 at 739.812 kb on + strand, within Shewana3_0630 at 739.972 kb on + strand, within Shewana3_0630 at 740.038 kb on - strand, within Shewana3_0630 at 740.094 kb on + strand, within Shewana3_0630 at 740.102 kb on - strand, within Shewana3_0630 at 740.102 kb on - strand, within Shewana3_0630 at 740.140 kb on + strand, within Shewana3_0630 at 740.284 kb on + strand, within Shewana3_0630 at 740.309 kb on + strand, within Shewana3_0630 at 740.381 kb on - strand, within Shewana3_0630 at 740.537 kb on - strand, within Shewana3_0630 at 740.633 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.703 kb on + strand, within Shewana3_0630 at 740.741 kb on + strand, within Shewana3_0630 at 740.792 kb on - strand at 740.908 kb on - strand at 740.923 kb on - strand at 740.969 kb on + strand at 740.975 kb on - strand at 740.994 kb on + strand at 740.997 kb on - strand at 741.161 kb on + strand at 741.245 kb on - strand at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.425 kb on + strand, within Shewana3_0631 at 741.433 kb on - strand, within Shewana3_0631 at 741.448 kb on - strand, within Shewana3_0631 at 741.701 kb on - strand, within Shewana3_0631 at 741.763 kb on + strand, within Shewana3_0631 at 741.848 kb on - strand, within Shewana3_0631 at 741.994 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 737,833 + +0.4 737,833 + -0.1 737,833 + +0.5 737,841 - +0.8 737,841 - -1.2 738,059 + Shewana3_0628 0.16 -0.8 738,249 - Shewana3_0628 0.62 -1.8 738,285 + Shewana3_0628 0.71 -1.5 738,327 - Shewana3_0628 0.81 -0.5 738,478 + -1.1 738,836 + +1.8 738,929 + +0.2 738,939 + +1.1 739,156 - Shewana3_0630 0.15 +0.5 739,214 + Shewana3_0630 0.18 -0.5 739,285 + Shewana3_0630 0.21 +1.3 739,759 - Shewana3_0630 0.43 -0.8 739,812 + Shewana3_0630 0.45 -2.2 739,972 + Shewana3_0630 0.53 -2.2 740,038 - Shewana3_0630 0.56 +0.0 740,094 + Shewana3_0630 0.58 +0.2 740,102 - Shewana3_0630 0.59 -2.0 740,102 - Shewana3_0630 0.59 -0.4 740,140 + Shewana3_0630 0.60 -0.1 740,284 + Shewana3_0630 0.67 -0.5 740,309 + Shewana3_0630 0.68 -1.2 740,381 - Shewana3_0630 0.71 +0.3 740,537 - Shewana3_0630 0.79 +1.0 740,633 + Shewana3_0630 0.83 +0.0 740,703 + Shewana3_0630 0.86 -0.5 740,703 + Shewana3_0630 0.86 +0.4 740,741 + Shewana3_0630 0.88 -0.0 740,792 - -1.1 740,908 - -1.9 740,923 - -0.2 740,969 + -1.6 740,975 - -1.8 740,994 + -0.5 740,997 - +0.5 741,161 + +0.1 741,245 - +1.8 741,425 + Shewana3_0631 0.23 +0.7 741,425 + Shewana3_0631 0.23 -0.4 741,425 + Shewana3_0631 0.23 +0.2 741,433 - Shewana3_0631 0.24 +1.8 741,448 - Shewana3_0631 0.26 -1.5 741,701 - Shewana3_0631 0.62 +0.2 741,763 + Shewana3_0631 0.71 +0.1 741,848 - Shewana3_0631 0.83 +0.2 741,994 + +0.6
Or see this region's nucleotide sequence