Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0626 and Shewana3_0627 are separated by 90 nucleotides Shewana3_0627 and Shewana3_0628 are separated by 550 nucleotides
Shewana3_0626: Shewana3_0626 - hypothetical protein (RefSeq), at 735,102 to 736,592
_0626
Shewana3_0627: Shewana3_0627 - hypothetical protein (RefSeq), at 736,683 to 737,444
_0627
Shewana3_0628: Shewana3_0628 - hypothetical protein (RefSeq), at 737,995 to 738,405
_0628
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 735.686 kb on - strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.688 kb on + strand, within Shewana3_0626 at 735.693 kb on + strand, within Shewana3_0626 at 735.696 kb on - strand, within Shewana3_0626 at 735.920 kb on + strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.928 kb on - strand, within Shewana3_0626 at 735.984 kb on - strand, within Shewana3_0626 at 736.021 kb on - strand, within Shewana3_0626 at 736.177 kb on + strand, within Shewana3_0626 at 736.242 kb on + strand, within Shewana3_0626 at 736.250 kb on - strand, within Shewana3_0626 at 736.288 kb on - strand, within Shewana3_0626 at 736.348 kb on - strand, within Shewana3_0626 at 736.484 kb on + strand at 736.493 kb on + strand at 736.651 kb on - strand at 736.733 kb on - strand at 736.733 kb on - strand at 737.012 kb on - strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.028 kb on + strand, within Shewana3_0627 at 737.111 kb on + strand, within Shewana3_0627 at 737.187 kb on - strand, within Shewana3_0627 at 737.252 kb on + strand, within Shewana3_0627 at 737.292 kb on - strand, within Shewana3_0627 at 737.300 kb on - strand, within Shewana3_0627 at 737.378 kb on + strand at 737.548 kb on + strand at 737.684 kb on - strand at 737.740 kb on - strand at 737.802 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.833 kb on + strand at 737.841 kb on - strand at 737.841 kb on - strand at 738.059 kb on + strand, within Shewana3_0628 at 738.249 kb on - strand, within Shewana3_0628 at 738.285 kb on + strand, within Shewana3_0628 at 738.327 kb on - strand, within Shewana3_0628
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 735,686 - Shewana3_0626 0.39 -2.6 735,688 + Shewana3_0626 0.39 -0.7 735,688 + Shewana3_0626 0.39 -0.2 735,693 + Shewana3_0626 0.40 -1.0 735,696 - Shewana3_0626 0.40 -2.3 735,920 + Shewana3_0626 0.55 -1.5 735,928 - Shewana3_0626 0.55 +0.2 735,928 - Shewana3_0626 0.55 -0.6 735,984 - Shewana3_0626 0.59 -1.2 736,021 - Shewana3_0626 0.62 -0.4 736,177 + Shewana3_0626 0.72 -0.3 736,242 + Shewana3_0626 0.76 -0.2 736,250 - Shewana3_0626 0.77 -1.0 736,288 - Shewana3_0626 0.80 +0.2 736,348 - Shewana3_0626 0.84 -1.8 736,484 + +0.3 736,493 + +1.2 736,651 - -1.1 736,733 - -0.1 736,733 - -0.1 737,012 - Shewana3_0627 0.43 -1.5 737,028 + Shewana3_0627 0.45 -0.3 737,028 + Shewana3_0627 0.45 -1.8 737,111 + Shewana3_0627 0.56 -0.1 737,187 - Shewana3_0627 0.66 -2.2 737,252 + Shewana3_0627 0.75 +0.0 737,292 - Shewana3_0627 0.80 -0.0 737,300 - Shewana3_0627 0.81 -1.1 737,378 + -0.1 737,548 + -0.1 737,684 - +0.0 737,740 - +0.2 737,802 + -0.4 737,833 + +0.4 737,833 + -0.1 737,833 + +0.5 737,841 - +0.8 737,841 - -1.2 738,059 + Shewana3_0628 0.16 -0.8 738,249 - Shewana3_0628 0.62 -1.8 738,285 + Shewana3_0628 0.71 -1.5 738,327 - Shewana3_0628 0.81 -0.5
Or see this region's nucleotide sequence