Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0613 and Shewana3_0614 are separated by 139 nucleotides Shewana3_0614 and Shewana3_0615 overlap by 4 nucleotides Shewana3_0615 and Shewana3_0616 overlap by 20 nucleotides
Shewana3_0613: Shewana3_0613 - hypothetical protein (RefSeq), at 718,878 to 719,681
_0613
Shewana3_0614: Shewana3_0614 - ATPase domain-containing protein (RefSeq), at 719,821 to 721,149
_0614
Shewana3_0615: Shewana3_0615 - two component transcriptional regulator (RefSeq), at 721,146 to 721,820
_0615
Shewana3_0616: Shewana3_0616 - hypothetical protein (RefSeq), at 721,801 to 722,148
_0616
Position (kb) 719
720
721
722 Strain fitness (log2 ratio) -2
-1
0
1 at 718.972 kb on - strand, within Shewana3_0613 at 719.203 kb on + strand, within Shewana3_0613 at 719.299 kb on + strand, within Shewana3_0613 at 719.338 kb on + strand, within Shewana3_0613 at 719.366 kb on + strand, within Shewana3_0613 at 719.398 kb on - strand, within Shewana3_0613 at 719.407 kb on - strand, within Shewana3_0613 at 719.442 kb on + strand, within Shewana3_0613 at 719.456 kb on - strand, within Shewana3_0613 at 719.620 kb on - strand at 719.762 kb on + strand at 719.830 kb on + strand at 719.849 kb on + strand at 719.923 kb on + strand at 719.972 kb on - strand, within Shewana3_0614 at 720.008 kb on - strand, within Shewana3_0614 at 720.015 kb on + strand, within Shewana3_0614 at 720.023 kb on - strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.037 kb on + strand, within Shewana3_0614 at 720.062 kb on - strand, within Shewana3_0614 at 720.150 kb on + strand, within Shewana3_0614 at 720.374 kb on + strand, within Shewana3_0614 at 720.498 kb on - strand, within Shewana3_0614 at 720.531 kb on + strand, within Shewana3_0614 at 720.539 kb on - strand, within Shewana3_0614 at 720.729 kb on + strand, within Shewana3_0614 at 720.965 kb on - strand, within Shewana3_0614 at 721.116 kb on + strand at 721.231 kb on - strand, within Shewana3_0615 at 721.341 kb on - strand, within Shewana3_0615 at 721.436 kb on - strand, within Shewana3_0615 at 721.544 kb on + strand, within Shewana3_0615 at 721.559 kb on - strand, within Shewana3_0615 at 721.661 kb on + strand, within Shewana3_0615 at 721.683 kb on + strand, within Shewana3_0615 at 721.839 kb on + strand, within Shewana3_0616 at 721.852 kb on - strand, within Shewana3_0616 at 722.045 kb on + strand, within Shewana3_0616
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 718,972 - Shewana3_0613 0.12 -0.6 719,203 + Shewana3_0613 0.40 +0.9 719,299 + Shewana3_0613 0.52 -0.1 719,338 + Shewana3_0613 0.57 +0.2 719,366 + Shewana3_0613 0.61 +0.3 719,398 - Shewana3_0613 0.65 +0.0 719,407 - Shewana3_0613 0.66 -0.7 719,442 + Shewana3_0613 0.70 +1.3 719,456 - Shewana3_0613 0.72 -0.5 719,620 - -0.6 719,762 + -1.9 719,830 + +0.7 719,849 + -0.4 719,923 + +0.0 719,972 - Shewana3_0614 0.11 +0.9 720,008 - Shewana3_0614 0.14 +0.7 720,015 + Shewana3_0614 0.15 -1.4 720,023 - Shewana3_0614 0.15 +0.8 720,037 + Shewana3_0614 0.16 +0.2 720,037 + Shewana3_0614 0.16 +0.2 720,062 - Shewana3_0614 0.18 -0.0 720,150 + Shewana3_0614 0.25 +0.2 720,374 + Shewana3_0614 0.42 +0.8 720,498 - Shewana3_0614 0.51 +0.8 720,531 + Shewana3_0614 0.53 +0.1 720,539 - Shewana3_0614 0.54 -0.2 720,729 + Shewana3_0614 0.68 -0.3 720,965 - Shewana3_0614 0.86 +0.5 721,116 + -0.9 721,231 - Shewana3_0615 0.13 -0.8 721,341 - Shewana3_0615 0.29 -0.2 721,436 - Shewana3_0615 0.43 -0.6 721,544 + Shewana3_0615 0.59 -0.5 721,559 - Shewana3_0615 0.61 -0.5 721,661 + Shewana3_0615 0.76 -0.3 721,683 + Shewana3_0615 0.80 -0.6 721,839 + Shewana3_0616 0.11 -2.0 721,852 - Shewana3_0616 0.15 -0.3 722,045 + Shewana3_0616 0.70 +0.1
Or see this region's nucleotide sequence