Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0576 and Shewana3_0577 are separated by 82 nucleotides Shewana3_0577 and Shewana3_0578 are separated by 40 nucleotides
Shewana3_0576: Shewana3_0576 - multi-sensor hybrid histidine kinase (RefSeq), at 671,854 to 675,564
_0576
Shewana3_0577: Shewana3_0577 - hypothetical protein (RefSeq), at 675,647 to 678,049
_0577
Shewana3_0578: Shewana3_0578 - serine/threonine protein kinase (RefSeq), at 678,090 to 679,898
_0578
Position (kb) 675
676
677
678
679 Strain fitness (log2 ratio) -2
-1
0
1
2 at 674.698 kb on - strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.709 kb on + strand, within Shewana3_0576 at 674.717 kb on - strand, within Shewana3_0576 at 674.767 kb on - strand, within Shewana3_0576 at 675.195 kb on - strand at 675.317 kb on + strand at 675.393 kb on + strand at 675.506 kb on + strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.544 kb on - strand at 675.606 kb on - strand at 675.653 kb on + strand at 675.742 kb on + strand at 675.802 kb on - strand at 675.859 kb on + strand at 675.907 kb on - strand, within Shewana3_0577 at 675.932 kb on + strand, within Shewana3_0577 at 676.010 kb on + strand, within Shewana3_0577 at 676.307 kb on + strand, within Shewana3_0577 at 676.473 kb on - strand, within Shewana3_0577 at 676.478 kb on - strand, within Shewana3_0577 at 676.519 kb on + strand, within Shewana3_0577 at 676.544 kb on + strand, within Shewana3_0577 at 676.585 kb on - strand, within Shewana3_0577 at 676.592 kb on + strand, within Shewana3_0577 at 676.613 kb on - strand, within Shewana3_0577 at 676.668 kb on + strand, within Shewana3_0577 at 676.693 kb on - strand, within Shewana3_0577 at 676.696 kb on + strand, within Shewana3_0577 at 676.762 kb on - strand, within Shewana3_0577 at 676.852 kb on - strand, within Shewana3_0577 at 676.960 kb on - strand, within Shewana3_0577 at 677.020 kb on - strand, within Shewana3_0577 at 677.237 kb on + strand, within Shewana3_0577 at 677.298 kb on - strand, within Shewana3_0577 at 677.325 kb on + strand, within Shewana3_0577 at 677.434 kb on - strand, within Shewana3_0577 at 677.590 kb on - strand, within Shewana3_0577 at 677.631 kb on + strand, within Shewana3_0577 at 677.640 kb on - strand, within Shewana3_0577 at 677.770 kb on - strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.776 kb on + strand, within Shewana3_0577 at 677.784 kb on - strand, within Shewana3_0577 at 677.860 kb on + strand at 677.905 kb on + strand at 677.913 kb on - strand at 677.958 kb on - strand at 677.976 kb on + strand at 677.984 kb on - strand at 678.017 kb on - strand at 678.017 kb on - strand at 678.133 kb on + strand at 678.361 kb on - strand, within Shewana3_0578 at 678.476 kb on + strand, within Shewana3_0578 at 678.484 kb on - strand, within Shewana3_0578 at 678.488 kb on + strand, within Shewana3_0578 at 678.579 kb on - strand, within Shewana3_0578 at 678.733 kb on - strand, within Shewana3_0578 at 678.768 kb on - strand, within Shewana3_0578 at 678.892 kb on - strand, within Shewana3_0578 at 678.926 kb on - strand, within Shewana3_0578
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 674,698 - Shewana3_0576 0.77 -1.5 674,709 + Shewana3_0576 0.77 +0.5 674,709 + Shewana3_0576 0.77 -1.2 674,717 - Shewana3_0576 0.77 +1.2 674,767 - Shewana3_0576 0.78 -0.5 675,195 - +1.8 675,317 + -1.8 675,393 + -0.4 675,506 + -0.0 675,544 - +0.2 675,544 - -1.0 675,544 - -0.9 675,606 - -0.4 675,653 + -1.7 675,742 + -1.2 675,802 - -1.6 675,859 + -0.1 675,907 - Shewana3_0577 0.11 -0.4 675,932 + Shewana3_0577 0.12 -0.5 676,010 + Shewana3_0577 0.15 -0.7 676,307 + Shewana3_0577 0.27 -1.0 676,473 - Shewana3_0577 0.34 -0.2 676,478 - Shewana3_0577 0.35 -1.0 676,519 + Shewana3_0577 0.36 -0.6 676,544 + Shewana3_0577 0.37 -0.0 676,585 - Shewana3_0577 0.39 +0.8 676,592 + Shewana3_0577 0.39 +0.5 676,613 - Shewana3_0577 0.40 -0.5 676,668 + Shewana3_0577 0.42 -0.3 676,693 - Shewana3_0577 0.44 -0.4 676,696 + Shewana3_0577 0.44 +1.5 676,762 - Shewana3_0577 0.46 -1.1 676,852 - Shewana3_0577 0.50 -0.4 676,960 - Shewana3_0577 0.55 -0.2 677,020 - Shewana3_0577 0.57 -2.1 677,237 + Shewana3_0577 0.66 +0.1 677,298 - Shewana3_0577 0.69 -0.2 677,325 + Shewana3_0577 0.70 -1.3 677,434 - Shewana3_0577 0.74 -0.2 677,590 - Shewana3_0577 0.81 -0.1 677,631 + Shewana3_0577 0.83 +0.1 677,640 - Shewana3_0577 0.83 -1.8 677,770 - Shewana3_0577 0.88 -1.2 677,776 + Shewana3_0577 0.89 -0.2 677,776 + Shewana3_0577 0.89 +0.1 677,784 - Shewana3_0577 0.89 -1.3 677,860 + -0.4 677,905 + -0.2 677,913 - +0.2 677,958 - -0.5 677,976 + +0.7 677,984 - -1.2 678,017 - -1.1 678,017 - -1.3 678,133 + -2.5 678,361 - Shewana3_0578 0.15 -1.0 678,476 + Shewana3_0578 0.21 +0.6 678,484 - Shewana3_0578 0.22 -0.6 678,488 + Shewana3_0578 0.22 -2.0 678,579 - Shewana3_0578 0.27 -2.5 678,733 - Shewana3_0578 0.36 -0.4 678,768 - Shewana3_0578 0.37 +0.1 678,892 - Shewana3_0578 0.44 -2.7 678,926 - Shewana3_0578 0.46 -0.9
Or see this region's nucleotide sequence