Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0268

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0267 and Shewana3_0268 are separated by 572 nucleotidesShewana3_0268 and Shewana3_0269 are separated by 304 nucleotides Shewana3_0267: Shewana3_0267 - hypothetical protein (RefSeq), at 300,704 to 301,093 _0267 Shewana3_0268: Shewana3_0268 - site-specific DNA-methyltransferase (adenine-specific) (RefSeq), at 301,666 to 302,505 _0268 Shewana3_0269: Shewana3_0269 - diguanylate cyclase (RefSeq), at 302,810 to 304,267 _0269 Position (kb) 301 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 300.743 kb on - strand, within Shewana3_0267at 300.743 kb on - strand, within Shewana3_0267at 300.764 kb on + strand, within Shewana3_0267at 300.881 kb on + strand, within Shewana3_0267at 300.881 kb on + strand, within Shewana3_0267at 300.975 kb on + strand, within Shewana3_0267at 301.004 kb on - strand, within Shewana3_0267at 301.075 kb on - strandat 301.771 kb on + strand, within Shewana3_0268at 301.796 kb on - strand, within Shewana3_0268at 301.809 kb on + strand, within Shewana3_0268at 301.819 kb on + strand, within Shewana3_0268at 301.855 kb on + strand, within Shewana3_0268at 301.892 kb on - strand, within Shewana3_0268at 301.897 kb on + strand, within Shewana3_0268at 301.915 kb on + strand, within Shewana3_0268at 301.923 kb on - strand, within Shewana3_0268at 301.940 kb on + strand, within Shewana3_0268at 301.953 kb on - strand, within Shewana3_0268at 302.047 kb on - strand, within Shewana3_0268at 302.141 kb on - strand, within Shewana3_0268at 302.182 kb on + strand, within Shewana3_0268at 302.291 kb on + strand, within Shewana3_0268at 302.299 kb on + strand, within Shewana3_0268at 302.324 kb on + strand, within Shewana3_0268at 302.353 kb on + strand, within Shewana3_0268at 302.415 kb on - strand, within Shewana3_0268at 302.856 kb on + strandat 302.864 kb on - strandat 302.912 kb on + strandat 302.912 kb on + strandat 303.238 kb on + strand, within Shewana3_0269at 303.257 kb on - strand, within Shewana3_0269at 303.318 kb on + strand, within Shewana3_0269at 303.371 kb on - strand, within Shewana3_0269at 303.385 kb on + strand, within Shewana3_0269at 303.385 kb on + strand, within Shewana3_0269at 303.393 kb on - strand, within Shewana3_0269at 303.505 kb on - strand, within Shewana3_0269

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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300,743 - Shewana3_0267 0.10 -3.1
300,743 - Shewana3_0267 0.10 -1.4
300,764 + Shewana3_0267 0.15 +0.6
300,881 + Shewana3_0267 0.45 +0.6
300,881 + Shewana3_0267 0.45 +0.7
300,975 + Shewana3_0267 0.69 +0.5
301,004 - Shewana3_0267 0.77 +0.7
301,075 - -1.1
301,771 + Shewana3_0268 0.12 +1.1
301,796 - Shewana3_0268 0.15 -1.3
301,809 + Shewana3_0268 0.17 +1.0
301,819 + Shewana3_0268 0.18 -0.1
301,855 + Shewana3_0268 0.23 +0.3
301,892 - Shewana3_0268 0.27 -1.4
301,897 + Shewana3_0268 0.28 +0.3
301,915 + Shewana3_0268 0.30 -0.0
301,923 - Shewana3_0268 0.31 -2.0
301,940 + Shewana3_0268 0.33 +0.3
301,953 - Shewana3_0268 0.34 -0.0
302,047 - Shewana3_0268 0.45 +1.5
302,141 - Shewana3_0268 0.57 -0.5
302,182 + Shewana3_0268 0.61 +0.0
302,291 + Shewana3_0268 0.74 -0.1
302,299 + Shewana3_0268 0.75 +0.9
302,324 + Shewana3_0268 0.78 +0.7
302,353 + Shewana3_0268 0.82 +0.6
302,415 - Shewana3_0268 0.89 -0.3
302,856 + -0.4
302,864 - -0.5
302,912 + +0.4
302,912 + +1.6
303,238 + Shewana3_0269 0.29 +0.1
303,257 - Shewana3_0269 0.31 -1.8
303,318 + Shewana3_0269 0.35 +0.3
303,371 - Shewana3_0269 0.38 -0.5
303,385 + Shewana3_0269 0.39 +0.2
303,385 + Shewana3_0269 0.39 -0.0
303,393 - Shewana3_0269 0.40 -1.3
303,505 - Shewana3_0269 0.48 -0.4

Or see this region's nucleotide sequence