Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0165 and Shewana3_0166 overlap by 14 nucleotides Shewana3_0166 and Shewana3_0167 are separated by 234 nucleotides Shewana3_0167 and Shewana3_0168 are separated by 119 nucleotides
Shewana3_0165: Shewana3_0165 - hypothetical protein (RefSeq), at 188,999 to 190,165
_0165
Shewana3_0166: Shewana3_0166 - GCN5-related N-acetyltransferase (RefSeq), at 190,152 to 190,640
_0166
Shewana3_0167: Shewana3_0167 - phage tail collar domain-containing protein (RefSeq), at 190,875 to 191,510
_0167
Shewana3_0168: Shewana3_0168 - Ig family protein (RefSeq), at 191,630 to 202,264
_0168
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 189.241 kb on + strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.344 kb on - strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.346 kb on + strand, within Shewana3_0165 at 189.347 kb on + strand, within Shewana3_0165 at 189.354 kb on - strand, within Shewana3_0165 at 189.366 kb on - strand, within Shewana3_0165 at 189.459 kb on + strand, within Shewana3_0165 at 189.469 kb on + strand, within Shewana3_0165 at 189.495 kb on + strand, within Shewana3_0165 at 189.517 kb on + strand, within Shewana3_0165 at 189.537 kb on - strand, within Shewana3_0165 at 189.577 kb on - strand, within Shewana3_0165 at 189.589 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.594 kb on + strand, within Shewana3_0165 at 189.602 kb on - strand, within Shewana3_0165 at 189.678 kb on + strand, within Shewana3_0165 at 189.760 kb on + strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.768 kb on - strand, within Shewana3_0165 at 189.770 kb on + strand, within Shewana3_0165 at 189.941 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.950 kb on + strand, within Shewana3_0165 at 189.958 kb on - strand, within Shewana3_0165 at 190.005 kb on + strand, within Shewana3_0165 at 190.138 kb on - strand at 190.172 kb on - strand at 190.189 kb on + strand at 190.197 kb on - strand at 190.397 kb on + strand, within Shewana3_0166 at 190.478 kb on - strand, within Shewana3_0166 at 190.562 kb on + strand, within Shewana3_0166 at 190.836 kb on + strand at 190.970 kb on + strand, within Shewana3_0167 at 191.034 kb on + strand, within Shewana3_0167 at 191.053 kb on + strand, within Shewana3_0167 at 191.244 kb on - strand, within Shewana3_0167 at 191.287 kb on - strand, within Shewana3_0167 at 191.365 kb on - strand, within Shewana3_0167 at 191.373 kb on + strand, within Shewana3_0167 at 191.373 kb on + strand, within Shewana3_0167 at 191.378 kb on + strand, within Shewana3_0167 at 191.381 kb on - strand, within Shewana3_0167 at 191.391 kb on - strand, within Shewana3_0167 at 191.407 kb on + strand, within Shewana3_0167 at 191.416 kb on - strand, within Shewana3_0167 at 191.422 kb on + strand, within Shewana3_0167 at 191.613 kb on + strand at 191.613 kb on + strand at 191.613 kb on + strand at 191.613 kb on + strand at 191.621 kb on - strand at 191.621 kb on - strand at 191.621 kb on - strand at 191.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 189,241 + Shewana3_0165 0.21 -0.9 189,344 - Shewana3_0165 0.30 -0.3 189,344 - Shewana3_0165 0.30 +0.0 189,346 + Shewana3_0165 0.30 -0.6 189,346 + Shewana3_0165 0.30 -0.3 189,347 + Shewana3_0165 0.30 -1.1 189,354 - Shewana3_0165 0.30 -1.2 189,366 - Shewana3_0165 0.31 -0.2 189,459 + Shewana3_0165 0.39 +0.0 189,469 + Shewana3_0165 0.40 +0.9 189,495 + Shewana3_0165 0.43 +0.3 189,517 + Shewana3_0165 0.44 -0.6 189,537 - Shewana3_0165 0.46 +0.7 189,577 - Shewana3_0165 0.50 -0.2 189,589 + Shewana3_0165 0.51 +0.0 189,594 + Shewana3_0165 0.51 +0.2 189,594 + Shewana3_0165 0.51 +0.3 189,602 - Shewana3_0165 0.52 -0.7 189,678 + Shewana3_0165 0.58 -0.6 189,760 + Shewana3_0165 0.65 +0.2 189,768 - Shewana3_0165 0.66 -0.4 189,768 - Shewana3_0165 0.66 -0.6 189,770 + Shewana3_0165 0.66 -0.3 189,941 + Shewana3_0165 0.81 -0.1 189,950 + Shewana3_0165 0.81 +1.1 189,950 + Shewana3_0165 0.81 +0.7 189,958 - Shewana3_0165 0.82 -0.5 190,005 + Shewana3_0165 0.86 -1.4 190,138 - -0.0 190,172 - +0.8 190,189 + -0.8 190,197 - -1.2 190,397 + Shewana3_0166 0.50 +0.6 190,478 - Shewana3_0166 0.67 -0.3 190,562 + Shewana3_0166 0.84 +0.1 190,836 + +0.4 190,970 + Shewana3_0167 0.15 -0.1 191,034 + Shewana3_0167 0.25 +0.1 191,053 + Shewana3_0167 0.28 -0.6 191,244 - Shewana3_0167 0.58 +0.5 191,287 - Shewana3_0167 0.65 +0.1 191,365 - Shewana3_0167 0.77 +1.0 191,373 + Shewana3_0167 0.78 +0.1 191,373 + Shewana3_0167 0.78 -0.4 191,378 + Shewana3_0167 0.79 +0.4 191,381 - Shewana3_0167 0.80 -0.8 191,391 - Shewana3_0167 0.81 +0.2 191,407 + Shewana3_0167 0.84 -0.3 191,416 - Shewana3_0167 0.85 -0.6 191,422 + Shewana3_0167 0.86 +0.2 191,613 + +0.2 191,613 + +0.5 191,613 + +0.6 191,613 + -0.2 191,621 - -1.2 191,621 - -0.3 191,621 - -0.1 191,634 - -1.9
Or see this region's nucleotide sequence