Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0103

Experiment: Spectinomycin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0102 and Shewana3_0103 are separated by 2 nucleotidesShewana3_0103 and Shewana3_0104 overlap by 4 nucleotidesShewana3_0104 and Shewana3_0105 overlap by 1 nucleotides Shewana3_0102: Shewana3_0102 - no description, at 115,587 to 118,601 _0102 Shewana3_0103: Shewana3_0103 - formate dehydrogenase beta subunit (RefSeq), at 118,604 to 119,518 _0103 Shewana3_0104: Shewana3_0104 - formate dehydrogenase gamma subunit (RefSeq), at 119,515 to 120,156 _0104 Shewana3_0105: Shewana3_0105 - formate dehydrogenase accessory protein FdhE (RefSeq), at 120,156 to 121,064 _0105 Position (kb) 118 119 120Strain fitness (log2 ratio) -1 0 1at 117.788 kb on - strand, within Shewana3_0102at 117.911 kb on + strand, within Shewana3_0102at 117.919 kb on - strand, within Shewana3_0102at 117.934 kb on - strand, within Shewana3_0102at 117.934 kb on - strand, within Shewana3_0102at 117.964 kb on + strand, within Shewana3_0102at 117.964 kb on + strand, within Shewana3_0102at 117.964 kb on + strand, within Shewana3_0102at 117.972 kb on - strand, within Shewana3_0102at 117.972 kb on - strand, within Shewana3_0102at 118.091 kb on + strand, within Shewana3_0102at 118.153 kb on + strand, within Shewana3_0102at 118.153 kb on + strand, within Shewana3_0102at 118.153 kb on + strand, within Shewana3_0102at 118.301 kb on - strandat 118.499 kb on + strandat 118.500 kb on + strandat 118.508 kb on - strandat 118.508 kb on - strandat 118.620 kb on + strandat 118.630 kb on + strandat 118.663 kb on + strandat 118.671 kb on - strandat 118.908 kb on + strand, within Shewana3_0103at 118.923 kb on + strand, within Shewana3_0103at 119.069 kb on + strand, within Shewana3_0103at 119.074 kb on + strand, within Shewana3_0103at 119.139 kb on - strand, within Shewana3_0103at 119.154 kb on + strand, within Shewana3_0103at 119.289 kb on + strand, within Shewana3_0103at 119.297 kb on - strand, within Shewana3_0103at 119.299 kb on + strand, within Shewana3_0103at 119.301 kb on - strand, within Shewana3_0103at 119.355 kb on + strand, within Shewana3_0103at 119.367 kb on - strand, within Shewana3_0103at 119.410 kb on + strand, within Shewana3_0103at 119.490 kb on - strandat 119.819 kb on - strand, within Shewana3_0104at 119.855 kb on - strand, within Shewana3_0104at 119.855 kb on - strand, within Shewana3_0104at 119.874 kb on - strand, within Shewana3_0104at 119.879 kb on + strand, within Shewana3_0104at 119.962 kb on + strand, within Shewana3_0104at 120.087 kb on + strand, within Shewana3_0104at 120.209 kb on + strandat 120.216 kb on + strandat 120.218 kb on + strandat 120.224 kb on - strandat 120.312 kb on - strand, within Shewana3_0105at 120.391 kb on - strand, within Shewana3_0105at 120.447 kb on - strand, within Shewana3_0105

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml
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117,788 - Shewana3_0102 0.73 +0.1
117,911 + Shewana3_0102 0.77 +1.0
117,919 - Shewana3_0102 0.77 +0.2
117,934 - Shewana3_0102 0.78 -0.5
117,934 - Shewana3_0102 0.78 +0.4
117,964 + Shewana3_0102 0.79 +0.4
117,964 + Shewana3_0102 0.79 +0.4
117,964 + Shewana3_0102 0.79 +0.1
117,972 - Shewana3_0102 0.79 -0.3
117,972 - Shewana3_0102 0.79 -1.0
118,091 + Shewana3_0102 0.83 +0.4
118,153 + Shewana3_0102 0.85 +0.6
118,153 + Shewana3_0102 0.85 +1.4
118,153 + Shewana3_0102 0.85 +0.3
118,301 - -1.0
118,499 + +0.3
118,500 + +1.3
118,508 - -0.9
118,508 - +0.2
118,620 + +0.6
118,630 + +0.6
118,663 + +0.2
118,671 - -0.3
118,908 + Shewana3_0103 0.33 +0.3
118,923 + Shewana3_0103 0.35 +0.5
119,069 + Shewana3_0103 0.51 +0.4
119,074 + Shewana3_0103 0.51 +0.7
119,139 - Shewana3_0103 0.58 -0.2
119,154 + Shewana3_0103 0.60 -0.2
119,289 + Shewana3_0103 0.75 +0.7
119,297 - Shewana3_0103 0.76 -0.5
119,299 + Shewana3_0103 0.76 +0.5
119,301 - Shewana3_0103 0.76 -0.3
119,355 + Shewana3_0103 0.82 +0.5
119,367 - Shewana3_0103 0.83 -0.4
119,410 + Shewana3_0103 0.88 +0.3
119,490 - -0.2
119,819 - Shewana3_0104 0.47 +0.2
119,855 - Shewana3_0104 0.53 +0.5
119,855 - Shewana3_0104 0.53 +0.1
119,874 - Shewana3_0104 0.56 -0.2
119,879 + Shewana3_0104 0.57 +0.3
119,962 + Shewana3_0104 0.70 +0.1
120,087 + Shewana3_0104 0.89 +0.3
120,209 + -0.1
120,216 + -0.0
120,218 + +0.4
120,224 - -1.2
120,312 - Shewana3_0105 0.17 -0.7
120,391 - Shewana3_0105 0.26 -0.5
120,447 - Shewana3_0105 0.32 -0.2

Or see this region's nucleotide sequence