Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4364 and Shewana3_4365 are separated by 191 nucleotides Shewana3_4365 and Shewana3_4366 overlap by 8 nucleotides
Shewana3_4364: Shewana3_4364 - manganese and iron superoxide dismutase (RefSeq), at 252,447 to 253,058
_4364
Shewana3_4365: Shewana3_4365 - chromate transporter (RefSeq), at 253,250 to 254,617
_4365
Shewana3_4366: Shewana3_4366 - chromate resistance exported protein (RefSeq), at 254,610 to 255,548
_4366
Position (kb) 253
254
255 Strain fitness (log2 ratio) -1
0
1
2 at 252.480 kb on - strand at 252.545 kb on + strand, within Shewana3_4364 at 252.604 kb on - strand, within Shewana3_4364 at 252.704 kb on - strand, within Shewana3_4364 at 253.035 kb on - strand at 253.077 kb on - strand at 253.395 kb on - strand, within Shewana3_4365 at 253.733 kb on - strand, within Shewana3_4365 at 253.777 kb on - strand, within Shewana3_4365 at 253.887 kb on + strand, within Shewana3_4365 at 253.892 kb on + strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 253.895 kb on - strand, within Shewana3_4365 at 254.045 kb on - strand, within Shewana3_4365 at 254.282 kb on - strand, within Shewana3_4365 at 254.389 kb on + strand, within Shewana3_4365 at 254.408 kb on - strand, within Shewana3_4365 at 254.412 kb on + strand, within Shewana3_4365 at 254.522 kb on + strand at 254.857 kb on + strand, within Shewana3_4366 at 254.865 kb on - strand, within Shewana3_4366 at 254.941 kb on + strand, within Shewana3_4366 at 255.027 kb on - strand, within Shewana3_4366 at 255.081 kb on + strand, within Shewana3_4366 at 255.218 kb on + strand, within Shewana3_4366 at 255.450 kb on + strand, within Shewana3_4366
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 252,480 - +0.5 252,545 + Shewana3_4364 0.16 +1.9 252,604 - Shewana3_4364 0.26 +0.3 252,704 - Shewana3_4364 0.42 +1.5 253,035 - -0.6 253,077 - +0.3 253,395 - Shewana3_4365 0.11 -0.0 253,733 - Shewana3_4365 0.35 +0.3 253,777 - Shewana3_4365 0.39 +0.0 253,887 + Shewana3_4365 0.47 -1.2 253,892 + Shewana3_4365 0.47 +0.1 253,895 - Shewana3_4365 0.47 +1.2 253,895 - Shewana3_4365 0.47 -0.9 254,045 - Shewana3_4365 0.58 +0.5 254,282 - Shewana3_4365 0.75 +0.8 254,389 + Shewana3_4365 0.83 -0.1 254,408 - Shewana3_4365 0.85 +0.3 254,412 + Shewana3_4365 0.85 +1.2 254,522 + +0.2 254,857 + Shewana3_4366 0.26 +1.9 254,865 - Shewana3_4366 0.27 +0.8 254,941 + Shewana3_4366 0.35 +0.3 255,027 - Shewana3_4366 0.44 +1.0 255,081 + Shewana3_4366 0.50 +0.3 255,218 + Shewana3_4366 0.65 +1.9 255,450 + Shewana3_4366 0.89 +0.3
Or see this region's nucleotide sequence