Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4273 and Shewana3_4274 are separated by 13 nucleotides Shewana3_4274 and Shewana3_4275 are separated by 87 nucleotides Shewana3_4275 and Shewana3_4276 are separated by 143 nucleotides
Shewana3_4273: Shewana3_4273 - hypothetical protein (RefSeq), at 155,350 to 156,240
_4273
Shewana3_4274: Shewana3_4274 - hypothetical protein (RefSeq), at 156,254 to 156,799
_4274
Shewana3_4275: Shewana3_4275 - hypothetical protein (RefSeq), at 156,887 to 157,792
_4275
Shewana3_4276: Shewana3_4276 - site-binding protein, DNA replication region (RefSeq), at 157,936 to 158,808
_4276
Position (kb)
156
157
158 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 155.897 kb on + strand, within Shewana3_4273 at 155.968 kb on + strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 155.969 kb on - strand, within Shewana3_4273 at 156.038 kb on + strand, within Shewana3_4273 at 156.134 kb on - strand, within Shewana3_4273 at 156.210 kb on - strand at 156.324 kb on + strand, within Shewana3_4274 at 156.357 kb on - strand, within Shewana3_4274 at 156.437 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.469 kb on + strand, within Shewana3_4274 at 156.518 kb on - strand, within Shewana3_4274 at 156.602 kb on + strand, within Shewana3_4274 at 156.685 kb on + strand, within Shewana3_4274 at 156.741 kb on + strand, within Shewana3_4274 at 157.103 kb on - strand, within Shewana3_4275 at 157.103 kb on - strand, within Shewana3_4275 at 157.120 kb on - strand, within Shewana3_4275 at 157.129 kb on - strand, within Shewana3_4275 at 157.507 kb on - strand, within Shewana3_4275 at 157.515 kb on - strand, within Shewana3_4275 at 157.601 kb on - strand, within Shewana3_4275 at 157.614 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.694 kb on - strand, within Shewana3_4275 at 157.824 kb on - strand at 158.143 kb on - strand, within Shewana3_4276 at 158.426 kb on + strand, within Shewana3_4276 at 158.445 kb on - strand, within Shewana3_4276 at 158.453 kb on - strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.550 kb on + strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.558 kb on - strand, within Shewana3_4276 at 158.618 kb on - strand, within Shewana3_4276 at 158.620 kb on - strand, within Shewana3_4276
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 155,897 + Shewana3_4273 0.61 -2.3 155,968 + Shewana3_4273 0.69 -0.4 155,969 - Shewana3_4273 0.69 +0.5 155,969 - Shewana3_4273 0.69 +0.9 156,038 + Shewana3_4273 0.77 -0.3 156,134 - Shewana3_4273 0.88 -0.7 156,210 - -0.7 156,324 + Shewana3_4274 0.13 +0.3 156,357 - Shewana3_4274 0.19 +0.3 156,437 + Shewana3_4274 0.34 -0.5 156,469 + Shewana3_4274 0.39 -0.1 156,469 + Shewana3_4274 0.39 +1.6 156,518 - Shewana3_4274 0.48 -2.2 156,602 + Shewana3_4274 0.64 +0.1 156,685 + Shewana3_4274 0.79 +0.4 156,741 + Shewana3_4274 0.89 -0.6 157,103 - Shewana3_4275 0.24 -2.7 157,103 - Shewana3_4275 0.24 -4.4 157,120 - Shewana3_4275 0.26 -2.8 157,129 - Shewana3_4275 0.27 -2.8 157,507 - Shewana3_4275 0.68 -2.5 157,515 - Shewana3_4275 0.69 -2.7 157,601 - Shewana3_4275 0.79 -2.8 157,614 - Shewana3_4275 0.80 -4.0 157,694 - Shewana3_4275 0.89 -1.2 157,694 - Shewana3_4275 0.89 -0.9 157,824 - -0.1 158,143 - Shewana3_4276 0.24 -2.3 158,426 + Shewana3_4276 0.56 -2.3 158,445 - Shewana3_4276 0.58 -0.4 158,453 - Shewana3_4276 0.59 -1.1 158,550 + Shewana3_4276 0.70 +1.9 158,550 + Shewana3_4276 0.70 -0.1 158,550 + Shewana3_4276 0.70 -2.8 158,558 - Shewana3_4276 0.71 +0.3 158,558 - Shewana3_4276 0.71 -3.2 158,558 - Shewana3_4276 0.71 +0.3 158,618 - Shewana3_4276 0.78 -0.4 158,620 - Shewana3_4276 0.78 -2.6
Or see this region's nucleotide sequence