Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4179 and Shewana3_4180 are separated by 10 nucleotides Shewana3_4180 and Shewana3_4181 are separated by 13 nucleotides
Shewana3_4179: Shewana3_4179 - hypothetical protein (RefSeq), at 45,611 to 46,507
_4179
Shewana3_4180: Shewana3_4180 - hypothetical protein (RefSeq), at 46,518 to 47,165
_4180
Shewana3_4181: Shewana3_4181 - hypothetical protein (RefSeq), at 47,179 to 47,901
_4181
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.567 kb on - strand at 45.605 kb on - strand at 45.659 kb on + strand at 45.679 kb on - strand at 45.709 kb on - strand, within Shewana3_4179 at 45.911 kb on + strand, within Shewana3_4179 at 45.954 kb on + strand, within Shewana3_4179 at 46.010 kb on - strand, within Shewana3_4179 at 46.118 kb on + strand, within Shewana3_4179 at 46.121 kb on - strand, within Shewana3_4179 at 46.133 kb on - strand, within Shewana3_4179 at 46.160 kb on + strand, within Shewana3_4179 at 46.289 kb on - strand, within Shewana3_4179 at 46.338 kb on - strand, within Shewana3_4179 at 46.419 kb on - strand at 46.431 kb on - strand at 46.608 kb on - strand, within Shewana3_4180 at 46.619 kb on + strand, within Shewana3_4180 at 46.762 kb on + strand, within Shewana3_4180 at 46.903 kb on + strand, within Shewana3_4180 at 46.947 kb on + strand, within Shewana3_4180 at 47.171 kb on - strand at 47.298 kb on + strand, within Shewana3_4181 at 47.414 kb on - strand, within Shewana3_4181 at 47.517 kb on + strand, within Shewana3_4181 at 47.547 kb on + strand, within Shewana3_4181 at 47.671 kb on + strand, within Shewana3_4181 at 47.689 kb on - strand, within Shewana3_4181 at 47.699 kb on - strand, within Shewana3_4181
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 45,567 - -0.2 45,605 - -0.2 45,659 + +1.9 45,679 - +0.2 45,709 - Shewana3_4179 0.11 -0.6 45,911 + Shewana3_4179 0.33 -0.9 45,954 + Shewana3_4179 0.38 -0.9 46,010 - Shewana3_4179 0.44 +0.8 46,118 + Shewana3_4179 0.57 -0.5 46,121 - Shewana3_4179 0.57 +0.1 46,133 - Shewana3_4179 0.58 +0.5 46,160 + Shewana3_4179 0.61 +0.9 46,289 - Shewana3_4179 0.76 +0.4 46,338 - Shewana3_4179 0.81 -1.7 46,419 - +0.9 46,431 - -0.1 46,608 - Shewana3_4180 0.14 -0.6 46,619 + Shewana3_4180 0.16 -2.9 46,762 + Shewana3_4180 0.38 -1.3 46,903 + Shewana3_4180 0.59 -0.7 46,947 + Shewana3_4180 0.66 -1.3 47,171 - +0.0 47,298 + Shewana3_4181 0.16 -0.0 47,414 - Shewana3_4181 0.33 +0.0 47,517 + Shewana3_4181 0.47 -1.8 47,547 + Shewana3_4181 0.51 -0.8 47,671 + Shewana3_4181 0.68 -0.8 47,689 - Shewana3_4181 0.71 +0.3 47,699 - Shewana3_4181 0.72 +0.2
Or see this region's nucleotide sequence