Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4177 and Shewana3_4178 are separated by 550 nucleotides Shewana3_4178 and Shewana3_4179 are separated by 275 nucleotides
Shewana3_4177: Shewana3_4177 - CBS domain-containing protein (RefSeq), at 43,496 to 44,170
_4177
Shewana3_4178: Shewana3_4178 - hypothetical protein (RefSeq), at 44,721 to 45,335
_4178
Shewana3_4179: Shewana3_4179 - hypothetical protein (RefSeq), at 45,611 to 46,507
_4179
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.821 kb on - strand, within Shewana3_4177 at 43.827 kb on - strand, within Shewana3_4177 at 43.849 kb on + strand, within Shewana3_4177 at 44.367 kb on - strand at 44.621 kb on + strand at 44.623 kb on + strand at 44.692 kb on + strand at 44.718 kb on + strand at 44.858 kb on - strand, within Shewana3_4178 at 44.998 kb on - strand, within Shewana3_4178 at 45.170 kb on - strand, within Shewana3_4178 at 45.214 kb on - strand, within Shewana3_4178 at 45.437 kb on - strand at 45.481 kb on - strand at 45.512 kb on - strand at 45.567 kb on - strand at 45.605 kb on - strand at 45.659 kb on + strand at 45.679 kb on - strand at 45.709 kb on - strand, within Shewana3_4179 at 45.911 kb on + strand, within Shewana3_4179 at 45.954 kb on + strand, within Shewana3_4179 at 46.010 kb on - strand, within Shewana3_4179 at 46.118 kb on + strand, within Shewana3_4179 at 46.121 kb on - strand, within Shewana3_4179 at 46.133 kb on - strand, within Shewana3_4179 at 46.160 kb on + strand, within Shewana3_4179 at 46.289 kb on - strand, within Shewana3_4179
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 43,821 - Shewana3_4177 0.48 -0.3 43,827 - Shewana3_4177 0.49 -1.0 43,849 + Shewana3_4177 0.52 -2.0 44,367 - +0.9 44,621 + -0.9 44,623 + -0.1 44,692 + +1.9 44,718 + +1.9 44,858 - Shewana3_4178 0.22 +0.2 44,998 - Shewana3_4178 0.45 +0.1 45,170 - Shewana3_4178 0.73 +0.8 45,214 - Shewana3_4178 0.80 +1.4 45,437 - +0.0 45,481 - -0.2 45,512 - -0.7 45,567 - -0.2 45,605 - -0.2 45,659 + +1.9 45,679 - +0.2 45,709 - Shewana3_4179 0.11 -0.6 45,911 + Shewana3_4179 0.33 -0.9 45,954 + Shewana3_4179 0.38 -0.9 46,010 - Shewana3_4179 0.44 +0.8 46,118 + Shewana3_4179 0.57 -0.5 46,121 - Shewana3_4179 0.57 +0.1 46,133 - Shewana3_4179 0.58 +0.5 46,160 + Shewana3_4179 0.61 +0.9 46,289 - Shewana3_4179 0.76 +0.4
Or see this region's nucleotide sequence