Experiment: Spectinomycin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4141 and Shewana3_4142 are separated by 242 nucleotides
Shewana3_4141: Shewana3_4141 - putative transposase (RefSeq), at 1,030 to 1,248
_4141
Shewana3_4142: Shewana3_4142 - IS4 family transposase (RefSeq), at 1,491 to 2,471
_4142
Position (kb) 1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.034 kb on - strand at 0.051 kb on + strand at 0.090 kb on + strand at 0.098 kb on - strand at 0.098 kb on - strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.113 kb on + strand at 0.130 kb on - strand at 0.147 kb on + strand at 0.163 kb on - strand at 0.363 kb on + strand at 0.363 kb on + strand at 0.383 kb on + strand at 0.408 kb on + strand at 0.421 kb on + strand at 0.423 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on + strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.431 kb on - strand at 0.433 kb on + strand at 0.439 kb on - strand at 0.441 kb on - strand at 0.441 kb on - strand at 0.458 kb on - strand at 0.491 kb on - strand at 0.543 kb on + strand at 0.543 kb on + strand at 0.545 kb on + strand at 0.545 kb on + strand at 0.551 kb on - strand at 0.566 kb on - strand at 0.568 kb on + strand at 0.576 kb on - strand at 0.585 kb on - strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.652 kb on + strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.660 kb on - strand at 0.769 kb on + strand at 0.769 kb on + strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.777 kb on - strand at 0.807 kb on - strand at 0.808 kb on - strand at 0.808 kb on - strand at 0.826 kb on - strand at 0.835 kb on - strand at 0.836 kb on - strand at 0.841 kb on + strand at 0.843 kb on - strand at 0.857 kb on + strand at 0.857 kb on + strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.865 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.929 kb on - strand at 0.938 kb on - strand at 0.960 kb on + strand at 0.968 kb on - strand at 0.975 kb on + strand at 0.975 kb on + strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.983 kb on - strand at 0.988 kb on + strand at 0.996 kb on - strand at 0.999 kb on - strand at 1.040 kb on - strand at 1.040 kb on - strand at 1.102 kb on + strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.138 kb on - strand, within Shewana3_4141 at 1.156 kb on + strand, within Shewana3_4141 at 1.269 kb on + strand at 1.279 kb on + strand at 1.321 kb on - strand at 1.323 kb on + strand at 1.596 kb on - strand, within Shewana3_4142 at 1.689 kb on - strand, within Shewana3_4142 at 1.980 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.130 kb on - strand, within Shewana3_4142 at 2.181 kb on - strand, within Shewana3_4142
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.025 mg/ml remove 34 - +1.9 51 + +1.9 90 + -1.4 98 - +0.3 98 - -0.1 113 + -3.4 113 + -0.8 113 + -2.0 113 + +1.9 130 - +1.5 147 + +0.9 163 - -0.4 363 + +0.9 363 + +0.3 383 + -1.7 408 + +0.1 421 + -0.7 423 + +1.9 431 + +0.3 431 + +0.3 431 + -2.1 431 + -0.1 431 - +0.9 431 - -0.9 431 - -0.1 431 - +0.5 431 - -1.1 433 + +0.9 439 - +0.9 441 - -0.4 441 - +0.1 458 - -1.9 491 - -2.0 543 + +0.9 543 + +1.9 545 + +1.9 545 + -1.2 551 - -1.4 566 - +0.2 568 + -0.1 576 - +0.0 585 - +0.0 652 + -0.1 652 + -1.6 652 + -0.9 660 - +0.7 660 - -0.1 660 - -2.8 660 - -0.7 769 + +0.3 769 + +0.4 777 - -0.1 777 - +0.5 777 - +1.9 777 - +1.3 777 - +0.2 777 - -0.6 807 - -0.4 808 - -1.0 808 - -0.9 826 - -0.4 835 - -0.4 836 - -1.2 841 + +0.3 843 - +1.9 857 + -0.8 857 + +0.4 865 - +0.7 865 - +0.3 865 - -0.9 865 - -0.2 929 - -0.3 929 - -0.8 929 - -2.0 938 - -1.0 960 + -1.2 968 - -0.4 975 + -0.9 975 + -1.1 983 - -0.3 983 - -0.7 983 - -1.0 988 + -1.0 996 - -0.4 999 - -0.8 1,040 - +0.9 1,040 - -0.8 1,102 + Shewana3_4141 0.33 -1.3 1,138 - Shewana3_4141 0.49 +0.1 1,138 - Shewana3_4141 0.49 -0.3 1,156 + Shewana3_4141 0.58 -1.4 1,269 + +1.9 1,279 + -0.7 1,321 - -0.2 1,323 + +1.5 1,596 - Shewana3_4142 0.11 -0.6 1,689 - Shewana3_4142 0.20 -0.8 1,980 - Shewana3_4142 0.50 -1.1 2,130 - Shewana3_4142 0.65 -2.1 2,130 - Shewana3_4142 0.65 -2.4 2,181 - Shewana3_4142 0.70 -0.2
Or see this region's nucleotide sequence