Strain Fitness in Shewanella loihica PV-4 around Shew_3831

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
4,560,743	-		Shew_3829	0.63	-0.1
4,561,121	+		Shew_3830	0.18	-1.0
4,561,172	+		Shew_3830	0.25	+0.2
4,561,180	-		Shew_3830	0.26	-0.2
4,561,180	-		Shew_3830	0.26	-0.0
4,561,252	+		Shew_3830	0.36	+0.8
4,561,284	+		Shew_3830	0.40	-0.1
4,561,354	+		Shew_3830	0.50	+0.5
4,561,460	-		Shew_3830	0.64	-0.1
4,561,519	-		Shew_3830	0.72	+0.2
4,561,592	-		Shew_3830	0.82	+0.5
4,561,615	+		Shew_3830	0.85	-0.2
4,561,617	+		Shew_3830	0.86	+0.0
4,561,617	+		Shew_3830	0.86	+1.7
4,561,623	-		Shew_3830	0.86	-0.1
4,561,625	-		Shew_3830	0.87	-0.2
4,561,625	-		Shew_3830	0.87	+0.2
4,561,625	-		Shew_3830	0.87	+0.8
4,561,625	-		Shew_3830	0.87	-0.3
4,561,629	+		Shew_3830	0.87	-0.0
4,561,629	+		Shew_3830	0.87	+0.4
4,561,637	-		Shew_3830	0.88	+0.1
4,561,637	-		Shew_3830	0.88	+0.4
4,561,637	-		Shew_3830	0.88	+0.3
4,561,647	-		Shew_3830	0.90	+0.1
4,561,723	+				-0.3
4,561,731	-				+1.5
4,561,829	+		Shew_3831	0.81	-0.0
4,561,829	+		Shew_3831	0.81	-0.6
4,561,829	+		Shew_3831	0.81	-0.1
4,561,829	+		Shew_3831	0.81	-0.6
4,561,829	+		Shew_3831	0.81	-0.4
4,561,833	+		Shew_3831	0.84	+0.1
4,561,833	+		Shew_3831	0.84	+0.3
4,561,833	+		Shew_3831	0.84	+0.2
4,561,833	+		Shew_3831	0.84	-0.0
4,561,837	-		Shew_3831	0.88	-0.8
4,561,837	-		Shew_3831	0.88	+0.3
4,561,841	-				+0.6
4,561,841	-				-0.2
4,561,841	-				+0.3
4,561,873	-				-0.4
4,561,874	+				+0.5
4,561,875	+				-0.7
4,561,875	+				-0.3
4,561,875	+				-0.3
4,561,875	+				-0.4
4,561,875	+				+0.2
4,561,875	+				+0.1
4,561,875	+				+0.1
4,561,875	+				-0.5
4,561,875	+				+0.5
4,561,875	+				-0.0
4,561,875	+				+0.1
4,561,875	+				+0.1
4,561,875	+				+0.2
4,561,875	+				-0.2
4,561,875	+				+0.5
4,561,875	+				-0.2
4,561,878	-				-0.3
4,561,880	+				-0.5
4,561,883	-				+0.4
4,561,883	-				-0.3
4,561,883	-				-0.4
4,561,883	-				-0.3
4,561,883	-				-0.0
4,561,883	-				-0.1
4,561,883	-				+0.1
4,561,883	-				-1.0
4,561,883	-				+0.5
4,561,883	-				-0.4
4,561,883	-				+0.1
4,561,883	-				+0.6
4,561,883	-				+0.6
4,561,883	-				+0.7
4,561,883	-				+0.5
4,561,883	-				-0.0
4,561,892	+				-0.2
4,561,905	-				-0.2
4,561,905	-				-0.8
4,561,910	+				-0.4
4,561,981	-				-0.1
4,562,050	+				+0.1
4,562,058	-				+0.5
4,562,058	-				-0.2
4,562,129	-				-0.2
4,562,131	+				+0.3
4,562,151	+				+1.4
4,562,167	+				-0.5
4,562,167	+				-1.3
4,562,167	+				-0.5
4,562,175	-				+1.8
4,562,175	-				-0.1
4,562,584	+		Shew_3832	0.18	+0.0
4,562,598	+		Shew_3832	0.18	-0.1
4,562,641	+		Shew_3832	0.20	-0.1
4,562,791	-		Shew_3832	0.28	+0.0