Strain Fitness in Shewanella loihica PV-4 around Shew_3788

Experiment: Ceftazidime 5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ceftazidime 5 mg/ml
4,504,607	+				+0.2
4,504,621	+				+0.2
4,504,700	-		Shew_3786	0.51	+0.4
4,504,879	-				+0.0
4,504,879	-				+0.2
4,505,133	+	mogA	Shew_3787	0.51	+0.3
4,505,141	-	mogA	Shew_3787	0.53	+0.6
4,505,231	+	mogA	Shew_3787	0.70	-0.0
4,505,488	+				+0.1
4,505,621	+				+0.6
4,505,746	-				+0.2
4,505,771	-				+0.3
4,506,063	-		Shew_3788	0.16	+0.0
4,506,105	+		Shew_3788	0.17	-0.1
4,506,105	+		Shew_3788	0.17	+0.0
4,506,105	+		Shew_3788	0.17	-0.7
4,506,246	-		Shew_3788	0.22	-0.9
4,506,457	+		Shew_3788	0.28	+0.6
4,506,567	-		Shew_3788	0.32	+0.1
4,506,604	+		Shew_3788	0.33	-0.7
4,506,633	-		Shew_3788	0.34	-0.3
4,506,719	+		Shew_3788	0.37	-0.2
4,506,813	-		Shew_3788	0.40	+0.2
4,506,840	+		Shew_3788	0.41	+0.2
4,506,903	-		Shew_3788	0.43	-0.2
4,506,951	-		Shew_3788	0.44	-0.6
4,507,073	-		Shew_3788	0.48	+0.1
4,507,354	+		Shew_3788	0.57	+0.1
4,507,703	-		Shew_3788	0.68	+0.5
4,507,948	+		Shew_3788	0.76	+0.3
4,508,075	+		Shew_3788	0.80	-0.1
4,508,100	-		Shew_3788	0.81	-0.2
4,508,321	-		Shew_3788	0.88	+0.3
4,508,455	-				-0.4
4,508,561	-				-0.7
4,508,655	+				+0.2
4,508,655	+				+0.2
4,508,663	-				-0.1
4,508,673	-				+0.4
4,508,775	-				-0.9
4,508,846	-		Shew_3789	0.15	-0.1
4,508,846	-		Shew_3789	0.15	+0.0
4,508,940	+		Shew_3789	0.25	-0.1
4,508,945	+		Shew_3789	0.26	+2.1
4,508,963	+		Shew_3789	0.27	+0.4
4,509,029	+		Shew_3789	0.34	-0.1
4,509,048	-		Shew_3789	0.36	+0.1
4,509,105	-		Shew_3789	0.42	+0.2
4,509,143	+		Shew_3789	0.46	+0.2
4,509,244	+		Shew_3789	0.57	+0.4
4,509,382	-		Shew_3789	0.71	+0.0
4,509,538	+		Shew_3789	0.87	-0.5
4,509,595	+				-0.2